BAC Information

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BAC

Clone NameMSMg01-203K10
Chromosome6 (Build37)
Map Location 112,417,370 - 112,517,777
singlet/doubletdoublet
Overlap geneCav3, Oxtr, LOC434076
Upstream geneGrm7, 1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975
Downstream geneEG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203K10.T7 (MSMg01no203_k10.b1)MSMg01-203K10.TJ (MSMg01no203_k10.g1)
ACCAG388336AG388337
length779728
length of high quality
(start - end)
164 (117 - 280)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no203_k10.b1 PHD_FILE: MSMg01no203_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:52 2005CHROMAT_FILE: MSMg01no203_k10.g1 PHD_FILE: MSMg01no203_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,517,614 - 112,517,777)(112,417,370 - 112,417,655)
sequence
GCGGCCGCTAAACGACTCCTANATCGNNGAGGTGCGCGGAATTCTTTGGT
GTGCCTATATATACCTCTCCACCTGGGGATACAACCCCAGGGATGCTTTT
CCATCATTGGCCCGAATGTAAGAATTGACTCATGCTGGTGTCTTAGAGAC
TCTGGAGCCAGCATCCCAGGTGGTGAGGCATGGAGAATCTGTCCCCTCAT
GACTTTACTGCCATGGTCTTGTAATCATTATCTAGCAACAACTGTCAAAT
GTTTTGTGGAGGTGTGTGTGTGTGTGTGTGTGTTTTCTCCTTTCCCCTCC
CCTCCTCCTTTTTTTCTTTTTCCAACAGCTCCCTTCCACTCTTCTCCTCT
TTTTTTTTTTTCCCCCCCCCCCCCCTCTCTTTTCTTTTCTTCTCTTTCTT
TCCTTTTCCCCCCCCCCCTTTAAAAAAAATTTTTTTTCTTCCTCTCTTTT
TTTCTTTCCCCTTTTCCTTCCCTTTGCCCCCCTTTCCCTTTTTTCTTTTC
TCTCCGCCCTTTTCCCCTTCTTTCCCGCTTTCTCCTCCTTTTCCCCCCGC
TATTTCCGCTTTGTTTCGTCTTCCTCTCCGTTTTCCTTCCCCCTCTTCTT
TCTCCTTCCTCCTCCTTTTTCCTCCCATCCTTCCTTTTTTCTTTTTTTTT
TCCTCCTTTTTCCTTCCCCCTTTCCCTTTTTTTTCTCCCCTCACTCCTCT
TTTCTTTCCCTCCTCTCCTTTTTTTTCCCCTTTTTTCTTTTTTTCTTCCC
CCCCTCCTCACTATCTTTTCCTCTCTTTT
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGTGGAGGCAGACTTTGGATGCAGG
AGTAGGTGTTGTCCTCCCACCCCATTTCCAGGCAACCCAGTGGTCCTGCA
CCTTGCCAACCTTCTAGTGACTGCAGGGACGGTGCAGACCTGTGCCAATG
AAACAACTGGCTTTCTTGTTGCTCCCAAAATAACTATGTCAGAGAAGACA
CAGGCTGAAAGAGTACCATCTTTCCTTCCCACCCTTCAGCTACATAGGTG
ACTCTGAGACTTTCTCAGCCCAAACCCTCCAAGAAAAATCCTTCTCCCTC
CCACTGCTATATATTAACCACCCCCCCGTGCTTGATGCACTACAGGTCAA
CCTATACATGCCCCCCCACTCTTATAGATGGCTTTGATGAATGGCTCTTC
GAGCTAGAATTTGTCGCCATACCGTTCTCACGCCTCATATCCATTCCATT
CGAGCTAGCTATCCTTTCCCTACTTATTCCAGCTCTCTATCTTTACGTTG
CTGCCTTTTTTACTATACCTCAGCTGCCTCACTTCGCTTTCCTTTAGATG
ATCCCTTCAATTCCTCCAGTGTCTTTGCCCCAAAACTCTGATATTAAATT
GTATTTTACCATCCTTCCCTTTCCCTACCTTCCCTTTTTCCGCCCTATTA
CCCTTTTCTTCTCTCCTTTATCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_k10.b1 MSMg01no203_k10.b1 CHROMAT_FILE:
MSMg01no203_k10.b1 PHD_FILE: MSMg01no203_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:52 2005
         (164 letters)



>mm_chr6_112517414_112517977
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaagaattgactcatgctggtgtcttagagactctggagccagcatcccaggtggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgtaagaattgactcatgctggtgtcttagagactctggagccagcatcccaggtggtga 305

                                                                       
Query: 61  ggcatggagaatctgtcccctcatgactttactgccatggtcttgtaatcattatctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggcatggagaatctgtcccctcatgactttactgccatggtcttgtaatcattatctagc 245

                                                       
Query: 121 aacaactgtcaaatgttttgtggaggtgtgtgtgtgtgtgtgtg 164
           |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 244 aacaactgtcaaatattttgtggaggtgtgtgtgtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no203_k10.g1 MSMg01no203_k10.g1 CHROMAT_FILE:
MSMg01no203_k10.g1 PHD_FILE: MSMg01no203_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:52 2005
         (287 letters)



>mm_chr6_112417170_112417856
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtggaggcagactttggatgcaggagtaggtgttgtcctcccaccccatttccaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tgggtggaggcagactttggatgcaggagtaggtgttgtcctcccacctcatttccaggc 260

                                                                       
Query: 61  aacccagtggtcctgcaccttgccaaccttctagtgactgcagggacggtgcagacctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccagtggtcctgcaccttgccaaccttctagtgactgcagggacggtgcagacctgt 320

                                                                       
Query: 121 gccaatgaaacaactggctttcttgttgctcccaaaataactatgtcagagaagacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaatgaaacaactggctttcttgttgctcccaaaataactatgtcagagaagacacag 380

                                                                       
Query: 181 gctgaaagagtaccatctttccttcccacccttcagctacataggtgactctgagacttt 240
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgaaagagtaccatctccccttcccacccttcagctacataggtgactctgagacttt 440

                                                         
Query: 241 ctcagcccaaaccctccaagaaaaatccttctccctcccactgcta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagcccaaaccctccaagaaaaatccttctccctcccactgcta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)