Query= MSMg01no204_d02.b1 MSMg01no204_d02.b1 CHROMAT_FILE:
MSMg01no204_d02.b1 PHD_FILE: MSMg01no204_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:38 2005
(561 letters)
>mm_chr6_17712980_17713941
Length = 962
Score = 998 bits (516), Expect = 0.0
Identities = 547/560 (97%), Gaps = 10/560 (1%)
Strand = Plus / Minus
Query: 5 gaattcccaatagtttagctttttgtattatcagtagctgtttgttgattcacattagcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaattcccaatagtttagctttttgtattatcagtagctgtttgttgattcacattagcc 701
Query: 65 cccaaactaatagttttaggacaagctattttacaaagaatttactcattgaaaacaatg 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 700 cccaaactaatagttttaggacaaactattttacaaagaatttactcattgaaaacaatg 641
Query: 125 gagttggggagggagaaaatggaaaatagaaaatagcggggg--aaaaagaaaaccaaac 182
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 640 gagttggggagggagaaaatggaaaatagaaaatagcggggggaaaaaagaaaaccaaac 581
Query: 183 aagactaatcctaattttagaggcatttaatgtcc--agagagagagagagagaacatta 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 580 aagactaatcctaattttagaggcatttaatgtccagagagagagagagagagaacatta 521
Query: 241 attccacagacagaatttaattttatttacttaaaaatgtcacgtcaagaaaatcctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attccacagacagaatttaattttatttacttaaaaatgtcacgtcaagaaaatcctgaa 461
Query: 301 ggcattcatcaaaaaaaaaaaaaaaat-ttcatactggccaaagtgcctaaaagatgaac 359
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 460 ggcattcatc---agaaaaaaaaaaatcttcatactggccaaagtgcctaaaagatgaac 404
Query: 360 atttccattactaaaatgaaaataaaaagcaagaagaaaaactaagttgctatggcaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atttccattactaaaatgaaaataaaaagcaagaagaaaaactaagttgctatggcaaga 344
Query: 420 aagggtctaacaactatggaactgtctcagttaaaatgtctatgattgtgtttttacttt 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagggtctaacaactatggaaccgtctcagttaaaatgtctatgattgtgtttttacttt 284
Query: 480 acgcaaactggatgtgtcaatgagaatttgaatttgcagatgagttgcttttttaaagtc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acgcaaactggatgtgtcaatgagaatttgaatttgcagatgagttgcttttttaaagtc 224
Query: 540 tgcaacacctcccc-ccccc 558
||||||||| |||| |||||
Sbjct: 223 tgcaacacc-ccccaccccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_d02.g1 MSMg01no204_d02.g1 CHROMAT_FILE:
MSMg01no204_d02.g1 PHD_FILE: MSMg01no204_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:38 2005
(613 letters)
>mm_chr6_17591641_17592651
Length = 1011
Score = 1133 bits (586), Expect = 0.0
Identities = 604/610 (99%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 1 tgttgagccaacttctattcaagcaggaatttcttatcagctatgatataaatagaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgagccaacttctattcaagcaggaatttcttatcagctatgatataaatagaattt 260
Query: 61 tttaaacttcacacagtgagaaatttttatggaatatttcaggacatttgggagccattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaacttcacacagtgagaaatttttatggaatatttcaggacatttgggagccattt 320
Query: 121 ttcataaagaatagaactttgcatttcagtgtaaaaatcacaggtccaataatagcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcataaagaatagaactttgcatttcagtgtaaaaatcacaggtccaataatagcagaa 380
Query: 181 ttacaaaataattgtctgaaatacattatcttatctaatagttgaaaaatattgcaagct 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ttacaaaataattgtctgaaatacattattttatctaatagttgaaaaatattgcaagct 440
Query: 241 tcaccttttaaaaattgaagtgtatagactgggaactttttaacagaatacttgcttgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaccttttaaaaattgaagtgtatagactgggaactttttaacagaatacttgcttgtc 500
Query: 301 ataataaggccttgagttcaattgtcagtaccaaaaatacatttaataaattaattaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataataaggccttgagttcaattgtcagtaccaaaaatacatttaataaattaattaaac 560
Query: 361 ttacgtttatgggagttttaaaaaatgcttctctacagtttgtgttgattttgataaaaa 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacatttatgggagttttaaaaaatgcttctctacagtttgtgttgattttgataaaaa 620
Query: 421 gttaactgcacgtggataccatgaagtggaatgggattctaactgttctgtgtcctgtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaactgcacgtggataccatgaagtggaatgggattctaactgttctgtgtcctgtca 680
Query: 481 cctgtgtgaacagagtcactgaaatagtgaggagtgttgatgtatagaaaatgaacgcag 540
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cct-t-tgaacagagtcactgaaatagtgaggagtgttgatgtatagaaaatgaacgcac 738
Query: 541 tgcaaatgacagaagaacatagatgtaaacaatccctgtaacactgtaggtcacaaacaa 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 739 tgcaaatgacagaagaacatagatgtaaacaatccttgtaacactgtaggtcacaaacaa 798
Query: 601 actatcatga 610
||||||||||
Sbjct: 799 actatcatga 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1011
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1001
Effective search space: 603603
Effective search space used: 603603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
