BAC Information

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BAC

Clone NameMSMg01-204F11
Chromosome6 (Build37)
Map Location 28,996,776 - 29,028,486
singlet/doubletdoublet
Overlap geneLep
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367
Downstream geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204F11.T7 (MSMg01no204_f11.b1)MSMg01-204F11.TJ (MSMg01no204_f11.g1)
ACCAG388758AG388759
length732763
length of high quality
(start - end)		194 (122 - 315)281 (78 - 358)
definitionCHROMAT_FILE: MSMg01no204_f11.b1 PHD_FILE: MSMg01no204_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:50 2005CHROMAT_FILE: MSMg01no204_f11.g1 PHD_FILE: MSMg01no204_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,996,776 - 28,996,969)(29,028,206 - 29,028,486)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCACTGATACCCAAAGAATCCTGCTTTCTCACTTTGAATATGAGAAAT
AGCATCGACCACCTCGAAGCCTTGCCTGCACCTGGCTTCCTCCCTTAGTA
CAGTGTGGGTTAACGTCTTAATCATTCTTCCTTGTCAAAAATGGCAAATT
TACCATCAGTAATTAACTCAACTATCAATAGAAATTCATTTCTTATTAAT
GCAGAAGTGCTGCTTCCGGAACCGTGGAAGAAGATCCCAGGCTTGCCTGT
TCGCCTTGCTTCTGTTTTTTGTGTCACTCCAGTGGAGTCAGCCCTTATCT
CATATTTTTTTGTCTCCGGAGCCCAGCTCCTTCGAATCAAATTAGAGTTA
ATTAAATCCTCCCCAACACACACAAAGAAAACTCACAGCATATACTGAGA
GTCCTGTCAGGCGTGATGGCACACACGTACAATCCCAGCACTTGGGAGGT
AGAGGCAGGGGGACCAAGAGTTCAAGGCCATCCTCTACTTAGCGAGTTTG
AGATCAATCTGAGCCAAATGAGACCCTGAAACAAAACATGTTTTCGGGTG
CATCAGTCTACTATAAACCAATGTATCTTTTCTGCTAAACCACATCACTT
TTGTTTTACTTTGTTAACAGTAATCCCTTTTATCACTTTACAACTTGAAT
CGCCAAACTTAAATTTTGAATTTAGTACCCTG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGCTTTGTTACAGAAAGGA
AGAGTAAATAGAATCTGCAAACGCAGCTGAAGCTCTGCATTCAGTCTTCT
CGAAGGATCTCAATTCTTCAGGCTACCTATGAGATCTGTAGCTCTGGCTG
CAATGGACCCGGTACCCAATCAATGGTCATGGCTTTCTACGATGTTTGAG
TGTCTACAGACATCTCCACTCTTTTCTTTCTTCCCTCGTCCCCCTTCCCT
TTTAAACACGGCCTTCTCCCTTCTCTGTAGACGCTCTGTCTTCTCATTGA
TCTTTTGCTGTTTTTCACACACCCGCCTCTCTGACGAGGACTCCTTCTTT
GGGACCCTGGGGGCACACCCCCTTATAAAAAAAGGTGGAGGTGGCAGGGT
ACTTCTGCTGCTCTTCTTCTCTTTTCCTCCCCCTTCCGATTTCATTACTT
ACTCAACATTCTCTTTTACCAACCTCTACTCTATCCCTCCTACTTGATCA
ACCTAACTTTTTTTCGTCTCTTACCCTCTTTTCTCTTCCTTTTCCCTATT
CTCTCTACCGTCCCCTTTCATTTGTATACTTCATTATAACTATCTAGTTT
TTATTCTTTTACTTATTTTTCTCTTGCATTTATATTCATTTATCATTATT
TTCTTACTCTCCTTTCACCATTAACTCTTACCTTCGTTTGTCCCCATCCC
TTGCACAATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_f11.b1 MSMg01no204_f11.b1 CHROMAT_FILE:
MSMg01no204_f11.b1 PHD_FILE: MSMg01no204_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:50 2005
         (194 letters)



>mm_chr6_28996576_28997169
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcctgcacctggcttcctcccttagtacagtgtgggttaacgtcttaatcattcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcctgcacctggcttcctcccttagtacagtgtgggttaacgtcttaatcattcttcc 260

                                                                       
Query: 61  ttgtcaaaaatggcaaatttaccatcagtaattaactcaactatcaatagaaattcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcaaaaatggcaaatttaccatcagtaattaactcaactatcaatagaaattcattt 320

                                                                       
Query: 121 cttattaatgcagaagtgctgcttccggaaccgtggaagaagatcccaggcttgcctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttattaatgcagaagtgctgcttccggaaccgtggaagaagatcccaggcttgcctgtt 380

                         
Query: 181 cgccttgcttctgt 194
           ||||||||| ||||
Sbjct: 381 cgccttgctcctgt 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no204_f11.g1 MSMg01no204_f11.g1 CHROMAT_FILE:
MSMg01no204_f11.g1 PHD_FILE: MSMg01no204_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:50 2005
         (281 letters)



>mm_chr6_29028006_29028686
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagctttgttacagaaaggaagagtaaatagaatctgcaaacgcagctgaagctctg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 481 agagagctttgttacagaaaggaagagtaaatagaatctgcaaacgaagctgaagctctg 422

                                                                       
Query: 61  cattcagtcttctcgaaggatctcaattcttcaggctacctatgagatctgtagctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattcagtcttctcgaaggatctcaattcttcaggctacctatgagatctgtagctctgg 362

                                                                       
Query: 121 ctgcaatggacccggtacccaatcaatggtcatggctttctacgatgtttgagtgtctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgcaatggacccggtacccaatcaatggtcatggctttctacgatgtttgagtgtctac 302

                                                                       
Query: 181 agacatctccactcttttctttcttccctcgtcccccttcccttttaaacacggccttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agacatctccactcttttctttcttccctcgtcccccttcccttttaaacacggccttct 242

                                                    
Query: 241 cccttctctgtagacgctctgtcttctcattgatcttttgc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cccttctctgtagacgctctgtcttctcattgatcttttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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