BAC Information

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BAC

Clone NameMSMg01-204G12
Chromosome6 (Build37)
Map Location 101,124,198 - 101,145,690
singlet/doubletdoublet
Overlap genePdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204G12.T7 (MSMg01no204_g12.b1)MSMg01-204G12.TJ (MSMg01no204_g12.g1)
ACCAG388797AG388798
length786750
length of high quality
(start - end)		312 (46 - 357)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no204_g12.b1 PHD_FILE: MSMg01no204_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:55 2005CHROMAT_FILE: MSMg01no204_g12.g1 PHD_FILE: MSMg01no204_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,124,198 - 101,124,505)(101,145,351 - 101,145,690)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAAACCTGTATGAGAACCACCACATGAACCTTTTCATGGCACA
CCAAAGGGATTCATGCAGTGCCTGTGCAGATCAGACTAAGTTTAGACTCC
CCCATCCATGTCTTGATGGAATCAATGACACAAAGCATGGGAGTGAAGGT
GAAGGTCTTTAGAATTTGGACACCTATCACATCTCTTCTACACAACTATG
GAGAAAGAGAGTGGTCCAGAACTGTGTCTCAGAGATGCATGTCTTTCCAT
GACACATGAAAATGGCGTTACTGTTTATAGCTGGCTTTCACTGAAAGGGA
CTTCTGACACATGTGTGTAAGGATTCATTAGCTTATTATCATGTGTTTTT
TTTTTAATTGACCAAACTTTTTTCCAAAAAAAAAGGAAAGTGTGTTATAC
TCACCTAAAGCTTTTAAATAATTCTTTTCATACATAACCTATATTTATAA
ATCTAAAACCAACCACTTTTAATACCCCTTACCTCTTTCCCCCCCCTTTT
CTTACTTTCCCTCATTATTTACTTTATCTTTATCCCCCATTTAAACAGTA
TCTTTACCATTTTCCTTTCTTCTTTCCTTTCTCCTTCTTCCTTTTTTTTT
TCAGAATTCCTACTTTGCTTCATTTTTACTCCTTATCCATCTTTTATTCT
TTCCATTCCTTCTCCTCTCCTTCTTCCCTAATTCTTCTATACTTTTTTTT
CTTCTTTTTTTCTTTCATTTATTTACTCTTTTTTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACAGCAGGTTGGAGACAGGAGA
TATTATTATCCCCAATCAAGGATGAAGCAGTTAAGATTCAAAGGAGTTAT
AAGTGGGGCTGGGTGTCATATCTGCACCACAATTCTCAGGTCTGAGAACC
TTTCCTTACACAAATCATTTCCAGCAGTGCCAGTGAGAGCATGACCAACT
CCACCGGGGTAAACTGATTACAGTCAGTGCAAGCACGAGGACACAAGTTC
CATCCTCAACACTCACAGAAGCCAGGTTTCATTGTGCTCACTTGTAATCT
CAGAGCTGAGAATGCTGAGACAGGAAGAGCCCACAAGCTCAAATAAGCAG
TCTTTGAGAATTGTGCCCCCACCTCTAGGAAATAATTCTGATAGAGACTA
CCCAATGACAAACAAACCTGTGTCAAAAATAAAAAGTTGGTGGCTCCTCG
GAATTATGGTAGAGGCTGACCTCTCTCCTTTAGGTACACAGACATTAGTG
TACATACATAATAGAGGCTGAGGGATAGTCTTCCTCTCTCTCTTCTTCTT
CTTTTTCCCTACTTCAACCTCCTTTTACGATTCTCTTCCTTTCCCTCTTC
TATTATTCCCTTCTGATATTTTTCTTTCTCCCCCTATTCCCGTCTTATTT
TTCCCCCTTTTCTCCTTATCTTATTGACTCGGTTCCCCCCTCAGTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_g12.b1 MSMg01no204_g12.b1 CHROMAT_FILE:
MSMg01no204_g12.b1 PHD_FILE: MSMg01no204_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:55 2005
         (312 letters)



>mm_chr6_101123994_101124705
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaaacctgtatgagaaccaccacatgaaccttttcatggcacaccaaaggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaaacctgtatgagaaccaccacatgaaccttttcatggcacaccaaaggga 264

                                                                       
Query: 65  ttcatgcagtgcctgtgcagatcagactaagtttagactcccccatccatgtcttgatgg 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 ttcatgcagtgcctgtgcagatcagactaagtttagactccccaatccatgtcttgatgg 324

                                                                       
Query: 125 aatcaatgacacaaagcatgggagtgaaggtgaaggtctttagaatttggacacctatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcaatgacacaaagcatgggagtgaaggtgaaggtctttagaatttggacacctatca 384

                                                                       
Query: 185 catctcttctacacaactatggagaaagagagtggtccagaactgtgtctcagagatgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catctcttctacacaactatggagaaagagagtggtccagaactgtgtctcagagatgca 444

                                                                       
Query: 245 tgtctttccatgacacatgaaaatggcgttactgtttatagctggctttcactgaaaggg 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tgtctttccatgacacatgaaaatggcgttactgcttatagctggctttcactgaaaggg 504

                   
Query: 305 acttctga 312
           ||||||||
Sbjct: 505 acttctga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_g12.g1 MSMg01no204_g12.g1 CHROMAT_FILE:
MSMg01no204_g12.g1 PHD_FILE: MSMg01no204_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:55 2005
         (341 letters)



>mm_chr6_101145211_101145951
          Length = 741

 Score =  580 bits (300), Expect = e-170
 Identities = 330/340 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacagcaggttggagacaggagatattattatccccaatcaaggatgaagcagttaaga 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct: 480 acacagcaggttggagacaggagatattattatccccaatcaaagatgaagcagttgaca 421

                                                                       
Query: 61  ttcaaaggagttataagtggggctgggtgtcatatctgcaccacaattctcaggtctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttcaaaggagttataagtggggctgggtgtcatatctgcaccacaattctcaggtctgag 361

                                                                       
Query: 121 aacctttccttacacaaatcatttccagcagtgccagtgagagcatgaccaactccaccg 180
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 360 aagctttccttacacaaatcatttccagcagtgccagtgagtgcatgaccaactccaccg 301

                                                                       
Query: 181 gggtaaactgattacagtcagtgcaagcacgaggacacaagttccatcctcaacactcac 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gggtaaagtgattacagtcagtgcaagcacgaggacacaagttccatcctcaacactcac 241

                                                                       
Query: 241 agaagccaggtttcattgtgctcacttgtaatctcagagctgagaatgctgagacaggaa 300
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 240 agaagccaggtttcattgcgctcacttgtaatctcagagctgagaatgcagagacagaaa 181

                                                   
Query: 301 gagcccacaagctcaaataagcagtctttgagaattgtgc 340
           ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 180 gagcccacaagctcagataagcagtctttgagaattgtgc 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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