BAC Information

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BAC

Clone NameMSMg01-205I09
Chromosome6 (Build37)
Map Location 21,568,030 - 21,568,325
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100041343
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205I09.T7 (MSMg01no205_i09.b1)MSMg01-205I09.TJ (MSMg01no205_i09.g1)
ACCAG389482
length724738
length of high quality
(start - end)
---291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no205_i09.b1 PHD_FILE: MSMg01no205_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:25 2005CHROMAT_FILE: MSMg01no205_i09.g1 PHD_FILE: MSMg01no205_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAATAGTAAAATATTTGAGGACATA
GTTTATAGAACTCAATGTTCCAATCCCGAGTCTAATATAAAAAAATAATT
CTGAGAAAAGATCTATGCTTTTTAAACTTCTTTTCTCTCATCTCTACATC
ATGAAATAACAGCAATCATTGAGGTTTACAGGGTGGGGATAAATGTGATA
ATTCTCATTAATACATGCATATGGAAATTGTGATGAACCAACATGGGTTA
CACTTTCTTGCCCAAAGAAATAATAGATCTTTTTCCAAATGTTTGTTGCT
CTTTCTGGATCATATTTTATATGCTCCCTCCACACTTGGTTTCCCTCCCC
AAGAACATATTGTTGACGNACCCCTACTATCTAGATATTCTGATCCTCAT
GGGAAATGCAGTTTTATCTCCATGACAAATAGCTTCTTTCTATTATTCTT
ATTTGGGATATACATACCACTTTTGCATAAATAGAAACTGATAACCAGGA
TGACTGCTCTATAAATATTCCTACTATGTAGAATAGTACAATTATCAATA
GTGACCACTTGGCTATTTGATTTCAAATGACACTAATATCTTTTAGCTAT
ATTCTATTACGTTTCTTAACTTCCTCTATAAAGGATAAAAGAAATTGCCT
CTGGAATAAGAAATTACCTAAAACTTCTTGAATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_i09.g1 MSMg01no205_i09.g1 CHROMAT_FILE:
MSMg01no205_i09.g1 PHD_FILE: MSMg01no205_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:25 2005
         (291 letters)



>mm_chr6_21567794_21568483
          Length = 690

 Score =  458 bits (237), Expect = e-133
 Identities = 279/297 (93%), Gaps = 8/297 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatagtaaaatatttgaggacatagtttatagaa-------ctcaatgttccaatccc 53
           |||||||||||||||||||||||||||| |||||||       |||||||||||||||| 
Sbjct: 532 aaaatagtaaaatatttgaggacatagtctatagaattaaatcctcaatgttccaatcct 473

                                                                       
Query: 54  gagtctaatataaaaaaataattctgagaaaagatctatgctttttaaacttcttttctc 113
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 472 gagtctaatat-aaaaaataattctgagaaaacatctatgctttttaaacttcttttctc 414

                                                                       
Query: 114 tcatctctacatcatgaaataacagcaatcattgaggtttacagggtggggataaatgtg 173
           |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct: 413 tcatctctccatcatgaaataatagcaatcattgaggtttacagggtggagataaaggtg 354

                                                                       
Query: 174 ataattctcattaatacatgcatatggaaattgtgatgaaccaacatgggttacactttc 233
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 353 ataattctcattaatacatgcatatgggaattgtgatgaaccaacatgggttacactttc 294

                                                                    
Query: 234 ttgcccaaagaaataatagatctttttccaaatgtttgttgctctttctggatcata 290
           |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 293 ttgcccaaagaaataatagatctttttccaaacgtctgttgctctttctggatcata 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)