BAC Information

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BAC

Clone NameMSMg01-207E24
Chromosome6 (Build37)
Map Location 98,214,477 - 98,292,034
singlet/doubletdoublet
Overlap geneGm765, LOC666019
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf
Downstream geneLOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207E24.T7 (MSMg01no207_e24.b1)MSMg01-207E24.TJ (MSMg01no207_e24.g1)
ACCAG390588AG390589
length1,2521,161
length of high quality
(start - end)
223 (37 - 259)378 (474 - 851)
definitionCHROMAT_FILE: MSMg01no207_e24.b1 PHD_FILE: MSMg01no207_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:05 2005CHROMAT_FILE: MSMg01no207_e24.g1 PHD_FILE: MSMg01no207_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,291,821 - 98,292,034)(98,214,477 - 98,214,854)
sequence
NNNCCGCAGTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTTTTTATATCTCTAATTCTGCTTCCTCCTCAGATGTCAGAAATTGAGTT
GGAAAAGATCATAGTAAGAACAGCCGAGCATTTTGAAAATGGCAAAAATA
ACCTTCCTTGGTTAAAAGAAGGTAAGCTGTCTTCTTCTGGACTTTCCTTC
TACTGCAGTGAAAATGGCGCTTTTGCTTACAGTCAGAAGATGGGTTGGGG
AGGGGTGGTANTCCTANNTCTCTNTGTTCTTGTTATTATNTCTTCTTGTC
TGANTAATTACTGTATATGTTAATTATTGTTCCGTACAATATTAACAATT
CATCATCTTGCCTTATCAATTTTAACAAGATTTTATAAATAAACCACATC
ATTTTTATTCACACAAAATTTTACATATCTTGTTTCTCAAATGAAAATTT
TATTGTTTTTTCCCCCCCCCCCTAAGCTTTGTGCTTTTTATAAAAAATAG
GGAAATGGCATGATGCTTCTTGAGTATTACATTGTGCTTTTGAATCTCTG
ATTTATTGGAACAGTGTGTCATATCCCATAATCATAACACTCCCTATTGT
CTCCACATCTGAATATACCCAAGGGTGCTGTTTGTCTCTGTGAACATCTG
CAGTAAATTATATGCTACTAATTTGCTCCAAGTCAATCTTATTACTTACA
GTAGCATGCCGTACCTCCCTATGCCATTTCCTAATTCCACCCTACTTTTG
CTAACTCACACCTTACTTCTATTTATTCATTATTCCCTCCCCGATGTTAA
GACTTTTTATACCCTTGTTATTATTTTTTTGTTTGATTCTCCCCGTACAA
GTCCTCCCCCCAACATTTGTCCTATATCTATATACTATTNTCTAAATCTT
ATTGTAACATCTTTTTTCTTATCTTTTTTCAAATCCTTATTGTCTTAATT
TTAAATACTCTTCTTACCTATAATACGCCCCTAATTATTACTCTTTATAT
CCCTAAATCTCTCTTTTACTCTTCAATAATATTCCTTTTCTTTAATAATA
TCATCTTCCTCATCCAATTTTAACTTTAATTACTCTCTCCCCCCTCTCTT
TCTTTTTTACTCCTCCCTCAATTCATTCTCCCATTACTATCGCTTTCATA
TATTTTTTCACTCACCCCATTAATTTTCCATCCCTATTTATATCTTACTA
ATACTCTCTTTTCTTTAACACTTCTTCATCTCTCCTCTATCTCCCTTCTC
TA
CCTCTATTNNNNATTCACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGAATCTCCACAATAACA
TAATGGGAAAGTTATTATGAACTCCATTTCCTTAGGGAAATGCTTCATGG
GGAGTAGGCTACCAAGCCTTATTCATTGCAGACTCTCAAACCAGTGCGGA
TTTGAGTAACAATTTGAATTTTGGCATTTGGAGGCCACTGTTCATTCCTT
TAGCTGCTAGGATATATACAGGTGATGCAAAGATGGATGACTGTGACTTT
AAGGGACATCATGGGCTATTTAAAACTGGCCAACACACCCACAGGTCTGA
GTGCTCACAGGCGTGCCTTTCACTCCACCTCTAATCTGATTTTTGTCAAC
CAATATAATTTTCCTTTATGACTAATATCTGATCCAAATTCCCCACTGAG
TCCAGTTCAGATGATAGGGTAGAAAGGACAGTAAAATAGATCTTATACGA
TGTGAATCAAGTTATTTTGGCTGTGCTCCCGCTCCTTCAGAACCGGATGC
ATATGGTTATGTCTTTATTAAGGCTATTTCCCAACATTACATTCAGGGCA
CTGCAAAATCAGATGATGATAACCACCGGGCCTCATCCCGTCAGCTGGGT
AGATAACTTGTCTGATTCCTCCCTGAGATGCCCAATCAATTCAGCTGTTG
TAAAAAGGAACAATGGAACTGGGCTGAAACTTCCAGAACCTGATGGTAAG
GACTCTGGCTCTTGCCTGCTTCATAAACAACAGCAGGTGGTCTTGCCAGC
ATCCGATACTCTGTCCCCTTTGCTTTTGACTTCTCCTCATGTCTTCTAAG
CTTCATGTGTTCTGTCTCCTTTACTACAAGGAGTTCCAGCTGCTGATTCC
TCTGCAAACCTACTACGGGAGAACAAAGTCCCCCAGATGTGCAGGCTTGG
AAAACAGCTATGAGATCTGCTCTTGGCAACTGGAAACTTTTTGGAAAGCT
AGGATACCTGCTTTTTGAAATAAGGGTTTGCCCAAAAGGGGGGAAATGGT
GGGGCCCCCAATCCCTTTTTGAACTCTGGTCCTACTTTTTAATTTTTCTG
GAGGGAGTATAAGGGAAAAAGGATACCCTTTTGCCCCTTTTTACTAAATG
GGTTATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_e24.b1 MSMg01no207_e24.b1 CHROMAT_FILE:
MSMg01no207_e24.b1 PHD_FILE: MSMg01no207_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:05 2005
         (223 letters)



>mm_chr6_98291612_98292235
          Length = 624

 Score =  383 bits (198), Expect = e-111
 Identities = 210/214 (98%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattctttttatatctctaattctgcttcctcctcagatgtcagaaattgagttggaaa 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattctttttatatctctaattctgcttcctcctcagatgtcagaaattgagttggaaa 364

                                                                       
Query: 70  agatcatagtaagaacagccgagcattttgaaaatggcaaaaataaccttccttggttaa 129
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agataaaagtaagaacagccgagcattttgaaaatggcaaaaataaccttccttggttaa 304

                                                                       
Query: 130 aagaaggtaagctgtcttcttctggactttccttctactgcagtgaaaatggcgcttttg 189
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagaaggtaagccgtcttcttctggactttccttctactgcagtgaaaatggcgcttttg 244

                                             
Query: 190 cttacagtcagaagatgggttgggg-aggggtgg 222
           ||||||||||||||||||||||||| ||||||||
Sbjct: 243 cttacagtcagaagatgggttgggggaggggtgg 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 624
Length adjustment: 9
Effective length of query: 214
Effective length of database: 615
Effective search space:   131610
Effective search space used:   131610
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no207_e24.g1 MSMg01no207_e24.g1 CHROMAT_FILE:
MSMg01no207_e24.g1 PHD_FILE: MSMg01no207_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:05 2005
         (378 letters)



>mm_chr6_98214277_98215054
          Length = 778

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacagtaaaatagatcttatacgatgtgaatcaagttattttggctgtgctcccgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 aaggacagtaaaatagatcttatacgatgtgaatcaagttattttggctgtgctcccgcg 260

                                                                       
Query: 61  ccttcagaaccggatgcatatggttatgtctttattaaggctatttcccaacattacatt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ccttcagaaccggatgcatatggttatgtctttattaaggctattttccaacattacatt 320

                                                                       
Query: 121 cagggcactgcaaaatcagatgatgataaccaccgggcctcatcccgtcagctgggtaga 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cagggcactgcaaaatcagatgatgataaccatcgggcctcatcccgtcagctgggtaga 380

                                                                       
Query: 181 taacttgtctgattcctccctgagatgcccaatcaattcagctgttgtaaaaaggaacaa 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacttgtctgattcctccctgagatgcccaatcaattcagctgttgtaaaaaggaacaa 440

                                                                       
Query: 241 tggaactgggctgaaacttccagaacctgatggtaaggactctggctcttgcctgcttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaactgggctgaaacttccagaacctgatggtaaggactctggctcttgcctgcttca 500

                                                                       
Query: 301 taaacaacagcaggtggtcttgccagcatccgatactctgtcccctttgcttttgacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaacaacagcaggtggtcttgccagcatccgatactctgtcccctttgcttttgacttc 560

                             
Query: 361 tcctcatgtcttctaagc 378
           ||||||||||||||||||
Sbjct: 561 tcctcatgtcttctaagc 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)