BAC Information

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BAC

Clone NameMSMg01-207L18
Chromosome6 (Build37)
Map Location 59,331,404 - 59,331,720
singlet/doubletsinglet
Overlap geneGprin3
Upstream geneLOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207L18.T7 (MSMg01no207_l18.b1)MSMg01-207L18.TJ (MSMg01no207_l18.g1)
ACCAG390864AG390865
length1,2491,250
length of high quality
(start - end)
318 (139 - 456)378 (70 - 447)
definitionCHROMAT_FILE: MSMg01no207_l18.b1 PHD_FILE: MSMg01no207_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:02 2005CHROMAT_FILE: MSMg01no207_l18.g1 PHD_FILE: MSMg01no207_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CCTCTATAAGTTCCAAGCAGAGTACATATTCTGCCTTATTGCCCACGCAT
CCAAAATCATCTATTGGTCTGATTGTTTTTCCCTATTCCAAGCTAACTAG
ATATAACTGAAGTAATTTTAGTAGAAACTGTCCCTCACTGATTATCAGGA
ATTAGTAGGAGGAGACATTAGACTATTGTTTTGAGAAGGGTGTGTATGCA
CCTCCACACAAGTCGAGGTCTTAGGCTCCTAACTAGTTGTTATGTGTTCT
GTTTGAAGAGGAGTACCTATGCATAGAACTTTTAGCAGGGGTCTATGCTG
GCTTTACACTCTATCATTGGATCAGTTCTGTTTTTAATTAATATAATGTA
ATTTTATCCAGTTAGTTTCACACACGTATACAATACATTCTGGTCACAAT
TCATTTTTTTATTCTCTCTTATCCTCCTGTTACACCCTTACTTATAATCG
AGTCCCCACCCCACTTATCTGTCTTTTTGTTTTGTTTTATTTTTGCTTTG
TAACTTATTGGGTTAAACAAAGTTTACCCAGGTAGGCATAAGTAAGAAGC
CATCTGCTGAAGGCTTTGTAAACTCATCTGTGCTAGGGCAGTTTTAGACT
AGGTTATTTGTTTTTTGGTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTATCTCTATCTCTATCTCTCTCTTTTTTTCTGGTATTGGGGTT
CACTGTATAGTCTGCATATTAATCCTCTATTAGTTGTGTAACTGATTCTT
TGACTGATGGGGATTTTTTGCACTTCCTTATGAACTTTATTATTAATAAT
TCTCTGTAATATGATATTGGTATTTTTATTGGTTAAACATTTGTATTTTC
TATTTTGTCTTTGTTTATTATGAAATTTATTTTTAATAAGTTTTCTTTTT
ATTTCGTGATTTTTGGTTAATATCTTTTTTTCATTATTCTATTTTTGTTA
TTTTTTCTTTTTTATATTGATTATTTTTTATTTATTTGGGATATTTAATA
TTTTTTGTTTTTTTTTTCTACTATAAATTTTTTTTATTGTTTCGTTATTA
GTTTATTCTTTATTATTCTATACCTCTTATTCTTTATATTATTTATATTT
TNTTTCTTATTTTCTATGTGTATTCTATTTTTTTATTATTCTATTATCTC
TATTTTACCTTTTTATTTCATTTATATTTATCTATTTTCTTACTTTATA
NNNGGATGATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCAGTTCTAAAAAGGTTTTAATATATATT
TTTTTAATTTCTGTCTTGACCAAATTCCCCCCCAGTAGTAGGTTGTTCAG
CTTCTATAACTTTGCTTCTATTGCCATGGATCTCTAGCTTTACCTTTGGT
AGCCAGATAAGATGCAGGATGTTATTTCAATGCTCATATATTCATTGAAG
TTTGCTTTGTTCCTTAATATATTGTCAATTTTGAAGAAATTCCCATGTGT
TACTTAAAAGAAACTATACTTTTAGTGTTAGGGTAAATGTTCTTTAGCTG
ACTGCTGGTCTACTTAATTTATGTTGTTAGTTCCAGAGTTTTTATGCTCT
TTTTGTCTGGATAATTTGTCTATTCATGAGAGGTTGATATTGGAATCTTT
TTTTATTACCCCCCGATAGTCAATGTGTTATCTGAAAAAAAAGAGTGCTT
CTTTTTATAAAATTGGGTGCTCTTTTGTTCGGTTTAAAAATGTTTAGAAC
TGCAATATCTTCTTAGTGGATTTTTCCTTTAATGAAGATGTAGTGATTTC
TTGACTCTTCTGATTAGTTTTATTTTGATTTCTCTTTAGTTTGACATTAT
TATAGCATATCCTATTTGCTTGAAATATCTCATTTCAATTATTTTTACCT
TTATGTGTTTTCTGACCTTGTATAGTGAATTTTGTTTCCTTGCTTGCTGC
TAAATATAATGCTAATGTTTTCTTATTTTACTCTGTTATTATTTCTCTAT
TTAACTGTTTAATTTATTCTCCTATTTCTTTTTTTTATCTCTTTTTCTTT
TTTTACTTATTTTCTCTTTTCTCTTTTTCTTCCATCTATTTTTTTTTCTA
TTATCTTCTCTTTCTATTTTTTTTTATTTATTTCTTATTTTATTTTTTTT
TCTATTCTTATCTTATCCTCATTCTCTTTCTATTTCTTCCATATTATCCT
TCTTCTATATTTTTCTTCTCTTTTTATTTTATTTTATTTCTTTTTTCATT
TATTGTTTTTTTTTATCTTTAATTTCCTATTTTATTCCTATTTTATAACT
CTTCTCTAATTATTTCTTCTTTAATTACTTTTATTCTTCTTCATTTTCTT
TACTTTTACATTGTCTTTCATTTTTCTCTTCTCCTTCTTCTATTCCTACT
AATTTTGATCTCATTAATTTTATTTATATATTCCCTTCTTTCTTATTTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_l18.b1 MSMg01no207_l18.b1 CHROMAT_FILE:
MSMg01no207_l18.b1 PHD_FILE: MSMg01no207_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:02 2005
         (318 letters)



>mm_chr6_59331204_59331921
          Length = 718

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagctaactagatataactgaagtaattttagtagaaactgtccctcactgattatcag 60
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 517 caagctaactagatataactggagtaattttagtagaaactgtccatcactgattatcag 458

                                                                       
Query: 61  gaattagtaggaggagacattagactattgttttgagaagggtgtgtatgcacctccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaattagtaggaggagacattagactattgttttgagaagggtgtgtatgcacctccaca 398

                                                                       
Query: 121 caagtcgaggtcttaggctcctaactagttgttatgtgttctgtttgaagaggagtacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 caagtcgaggtcttaggctcctaactagttgttatgtgttctgtttgaagaggagtacct 338

                                                                       
Query: 181 atgcatagaacttttagcaggggtctatgctggctttacactctatcattggatcagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atgcatagaacttttagcaggggtctatgctggctttacactctatcattggatcagttc 278

                                                                       
Query: 241 tgtttttaattaatataatgtaattttatccagttagtttcacacacgtatacaatacat 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 277 tgtttttaattaatataatgtaatttaatccagttagtttcacacacgtatacaatacat 218

                            
Query: 301 tctggtcacaattcatt 317
           |||||||||||||||||
Sbjct: 217 tctggtcacaattcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)