BAC Information

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BAC

Clone NameMSMg01-208A16
Chromosome6 (Build37)
Map Location 75,881,296 - 75,881,605
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208A16.T7 (MSMg01no208_a16.b1)MSMg01-208A16.TJ (MSMg01no208_a16.g1)
ACCAG391056AG391057
length710737
length of high quality
(start - end)
315 (45 - 359)152 (77 - 228)
definitionCHROMAT_FILE: MSMg01no208_a16.b1 PHD_FILE: MSMg01no208_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:43 2005CHROMAT_FILE: MSMg01no208_a16.g1 PHD_FILE: MSMg01no208_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGGGTTCTACTTTGTGAGTCTCTTGTGGAATAAGTGGCAACTTT
ACAAACTTTTCTGTCGTCTCCCATTGCTCCTTGCTCCTACTTATGTTTTG
CCGAAGTCAGATGGTGACCAGCTCCCTGTTCCTGAAACAAATGGCATTCC
CATTTTCTGTTGATTCTTTTTAGCTATTTGAAGGATTGAGGGTAGATTCT
TCATCAACACATATATAACGAAACCCCTGGACTAATGGATGAAGTTTCTA
ACAAAACTGTTCTTGCTATGCTTTGTGGTACTTATGAGAGTAAATTTTAA
CATTAATGTATTTGGATAACACCAAGCCCACACTAGAATTTAATGTCATC
ACAACATTTTCACCTCCGCACCTTCCCAGCTACTTGGTACCTCTGACCCT
TGGGCGTTAGACTCCTATGCTTTGCATATTCTGCTGTGACAGTAATATGT
GTTTCATGCACTGTAGACAACACAATGGAGGAAATTATTAAGTGAGATGC
ATAGAATGAAATGAAAACCTGATGTACAGAGAACTCCAATGGTAAAGCTG
ACCTTTTTATACTGAAGATCAATATTAGTAATGAATTTATCCTTGACTAA
ATATGAACACCCACAAATCAAATCTGTTAACATTTATATACAATATACCA
TTTTATAGTT
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTTTTCCAAGATGATCCTTA
TTGTTACTGGATTTGTAGCTCCAAGGAGCCTTGTTTGAATGTCCCAGACT
TCTGCTAAGAATCACTTCCTGTAGCCTAGCATAACGATCATCAGAGAGGC
TTCACCCAGCAGCTGATGGAAACAGATGGCAGAGAGTCCTTAATAAGTCC
AACACACTTAAAGGTGGGAACCTTTGGGGGAATCCTGCGGAAGANNNAAG
AATTCCGAAAAGGGAGGTTCTTGGGGGGGGGGTGGGCCAAAAAAAAACCC
CCCGGGAAAATTTCCAAACCTTGGGGGGCCCCGGGGGGGGGCCCAAAAAA
AAGAGGAGTTTTTTTGTTTTTTAACCCCCCCCCCCCCCCCCCCCCCCCGA
GGANNNNNGNCGGAGANNNNCCCCCCCCAGGGTGTGGTGGGGNNNNNTGA
TGGANAATTTTTTNNTTTTGATTTAAGGTGTTTCGTGCGGTAAAAACAAT
TCTTCCTCCCCGTCCTGGCCTCCTACTCACTGNCCCCACATACCTTNNCC
AATCAAAAGGAAAATAAAAAAGTAAACNCCAAAAATAAAAAATAAAAAAT
NTTGNNTGAATAGAGAGGCAAAAAAGATGTTNAAAAATATAAAAGGATAA
GGGGNAGTGGTNTGNATGCCCTCTNACCCCGCGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_a16.b1 MSMg01no208_a16.b1 CHROMAT_FILE:
MSMg01no208_a16.b1 PHD_FILE: MSMg01no208_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:43 2005
         (315 letters)



>mm_chr6_75881092_75881806
          Length = 715

 Score =  538 bits (278), Expect = e-157
 Identities = 302/310 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgggttctactttgtgagtctcttgtggaataagtggcaactttacaaactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgggttctactttgtgagtctcttgtggaataagtggcaactttacaaactt 264

                                                                       
Query: 65  ttctgtcgtctcccattgctccttgctcctacttatgttttgccgaagtcagatggtgac 124
           |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct: 265 ttctgtggtctcccattgctccttgctcctacttatgttttgctgaattcagatggtgtc 324

                                                                       
Query: 125 cagctccctgttcctgaaacaaatggcattcccattttctgttgattctttttagctatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagctccctgttcctgaaacaaatggcattcccattttctgttgattctttttagctatt 384

                                                                       
Query: 185 tgaaggattgagggtagattcttcatcaacacatatataacgaaacccctggactaatgg 244
           ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 385 tgaaggattgagggtagattcttcaccaacagatatataatgaaacccctggactaatgg 444

                                                                       
Query: 245 atgaagtttctaacaaaactgttcttgctatgctttgtggtacttatgagagtaaatttt 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 atgaagtttctaacaaaactgttcttgctatgctttgtggtatttatgagagtaaatttt 504

                     
Query: 305 aacattaatg 314
           ||||||||||
Sbjct: 505 aacattaatg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)