This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
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BAC name
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Search Result
BAC
Clone Name
MSMg01-208C01
Chromosome
6 (Build37)
Map Location
44,270,057 - 44,430,919
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Tpk1
,
LOC665747
,
LOC546897
,
LOC665779
Downstream gene
LOC100040210
,
Cntnap2
Link
Open Mouse BAC browser
Click to get alignment info.
name
Tpk1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:29807
MGI:1352500
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC665747
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665747
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
pseudo
: _no_value
name
LOC546897
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:546897
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
LOC665779
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665779
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 600 ESTs, 10 Proteins
pseudo
: _no_value
name
LOC100040210
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040210
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Cntnap2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:66797
MGI:1914047
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Tpk1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142365527
GeneID:29807
MGI:1352500
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: thiamine pyrophosphokinase
transcript_id
: NM_013861.2
name
Cntnap2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:52138537
GeneID:66797
MGI:1914047
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: contactin associated protein-like 2
transcript_id
: NM_001004357.1
name
Tpk1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7305589
GeneID:29807
MGI:1352500
definition
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004788 - thiamin diphosphokinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0009229 - thiamin diphosphate biosynthesis [Evidence IEA]; GO:0006772 - thiamin metabolism [Evidence IDA]
codon_start
: 1
product
: thiamin pyrophosphokinase
protein_id
: NP_038889.1
name
Cntnap2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:52138538
GeneID:66797
MGI:1914047
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: isoform a is encoded by transcript variant 1
product
: contactin associated protein-like 2 isoform a
protein_id
: NP_001004357.1
name
LOC546897
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:546897
definition
number
: 4
pseudo
: _no_value
name
LOC546897
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:546897
definition
number
: 3
pseudo
: _no_value
name
LOC546897
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:546897
definition
number
: 2
pseudo
: _no_value
name
LOC546897
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:546897
definition
number
: 1
pseudo
: _no_value
name
LOC100040210
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040210
definition
number
: 1
pseudo
: _no_value
name
LOC100040210
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040210
definition
number
: 2
pseudo
: _no_value
name
LOC100040210
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040210
definition
number
: 3
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:235430
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:130901
definition
standard_name
: D6Mit350
name
(CDS detail)
type
STS
link
xref
UniSTS:130978
definition
standard_name
: D6Mit76
name
(CDS detail)
type
STS
link
xref
UniSTS:224372
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:130750
definition
standard_name
: D6Mit207
name
(CDS detail)
type
STS
link
xref
UniSTS:116320
definition
standard_name
: D6Mit223
name
(CDS detail)
type
STS
link
xref
UniSTS:224710
definition
name
LOC665747
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149255080
GeneID:665747
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
product
: similar to 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
pseudo
: _no_value
transcript_id
: XR_032342.1
name
LOC665779
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149255081
GeneID:665779
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 600 ESTs, 10 Proteins
product
: similar to 60S ribosomal protein L7a (Surfeit locus protein 3)
pseudo
: _no_value
transcript_id
: XR_032354.1
clone name
MSMg01-448C05
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-237O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510E15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535O05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371C05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-485K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-100G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429E11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-187K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461E23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-113I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231P04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-274O09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531C15
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-178L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-309B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-047C12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-382C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494D09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055E20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522N10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-509D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-063H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260N01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-295B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-208C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-471H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-289L05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398I15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-069K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447O03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-073E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-326J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-511F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-190G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-365B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133C12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-152B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-527G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-465F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-060H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-119O14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458B03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-119J08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263C12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-438B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493E22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-117L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147A20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317M06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-175M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-180K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-099L24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-293I13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-304E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095A21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-288G03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-133E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-115B17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-084I08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-102E17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-181L11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-345G24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-024G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-106D13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-086O23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-189E23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-151B21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-111F22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-295N09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319G20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-245A10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-307C09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-309H03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-202L19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-187H10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-019J07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-264C19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-264D19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159C19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-154J01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021A12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060M13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-294M09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-350M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335N18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-322O14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-271G19
singlet/doublet
singlet
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doublet
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doublet
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