BAC Information

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BAC

Clone NameMSMg01-208D01
Chromosome6 (Build37)
Map Location 63,827,515 - 63,827,840
singlet/doubletsinglet
Overlap geneGrid2
Upstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneAtoh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208D01.T7 (MSMg01no208_d01.b1)MSMg01-208D01.TJ (MSMg01no208_d01.g1)
ACCAG391150AG391151
length677703
length of high quality
(start - end)
322 (45 - 366)323 (381 - 703)
definitionCHROMAT_FILE: MSMg01no208_d01.b1 PHD_FILE: MSMg01no208_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:55 2005CHROMAT_FILE: MSMg01no208_d01.g1 PHD_FILE: MSMg01no208_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCCTTCAGCTTTAACTTAAATATCTAAAGATGAGCAATTTGGTG
ATGGGGGAAGACCTTGAGATATTTTTAGTTGTCCTTTGTAAATTGTTGTT
CTGCTCATTCCTAACACACACATACACACACACACACACACATACACACA
CACACCAGGTATTATTCTTTGCCTGGTCAAGGACTGACTTCATGGTTTCC
ATGGCAACCCAGTTTGCTCAGTGCTCTCTTTCAGCAGCTGCTGATTACAC
TTTGAATTTTATTTGCATCCATGATTAAGAAGGAGTATAAAAGACTGAGG
TAATTTTTTTTAAACACCACCACGATAAAAGACATTTCAATCAATGATTC
TCTGTAGCTTTAATTAAAAATAAAAGAATAGAAGGAGATACCAGGATTTT
GGGAAACTTTTATTTAATGGCTGACTAATTCTGGCAATAATATTAAATGA
AGGTGCCTTCCTGAACTTGTGCAGTTTGCAGACTGTACACCACTAGCTAT
CAAAGACACACAGTGCAGTTTGTTTTCTATTCATGGNCTGTCAACTTTCG
GAAAGTATCCCACATGAACTGCTAAATCCAGGCTAGGAAAAAAAGAATTC
CCAAAAAATTTAGTTTGAAATTGTTAG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTTTTATGCCTATAGGTCTGA
TTAGCTCTCAGACTTCAACTGCCAAGTTTCTTCACGCAGTGGAAAACAAT
TCATGTAGAAACTCATAATAAATCAGGGTGCAGAGAATCCTGGGTTTCTC
TAGTGCTCAGATGCAAAGGCGACATCTACCTCAAGCTCTTTTCTTTCAAG
GTGCTGGGAACGCTGGAGAAGAAGGGGCAGAAAGAATAATAAAACAAAAG
ATGAGGACAAGATGACAATAGCAAAGCAGTGTCTTTGGGCATCACAGGGT
TGTTGCTGCTTTTAGCAGCTGTGCCTGCATGCAAAAGACTTGACTAATCC
ACTCAAAATTCCAGCATGGAGGGAAAGGATTTGTGACATCCATCTTGTCA
GATCATAGCTTCTAGGATAGGAAGATTGATTTCCGTTAAGAGCGTGGCCT
ATGATACCCTAAGGAATAACCTCATGCCCATTGGGTAACATTAACTGGAC
TTAGTAGAATATTTAAAAACAAACAAACAAACAGACAGACAGACAGACAA
ACAAACAAGCAAAGGAGATCATGAAGCTGTAAATGGGTGCAAAATGTATC
TGAGGGGAGTTAAAGGCAAAGAAAAGGGGTTAACTTGATCAAAACACATT
GTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_d01.b1 MSMg01no208_d01.b1 CHROMAT_FILE:
MSMg01no208_d01.b1 PHD_FILE: MSMg01no208_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:55 2005
         (322 letters)



>mm_chr6_63827154_63827875
          Length = 722

 Score =  588 bits (304), Expect = e-172
 Identities = 317/326 (97%), Gaps = 8/326 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactccttcagctttaacttaaatatctaaagatgagcaatttggtgatggggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcactccttcagctttaacttaaatatctaaagatgagcaatttggtgatggggga 628

                                                                       
Query: 65  agaccttgagatatttttagttgtcctttgtaaattgttgttctgctcattccta----- 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 627 agaccttgagatatttttagttgtcctttgtaaattgttgttctgctcattcctaacaca 568

                                                                       
Query: 120 ---acacacacatacacacacacacacacacatacacacacacaccaggtattattcttt 176
              ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cacacacacacacacacacacacacacacacatacacacacacaccaggtattattcttt 508

                                                                       
Query: 177 gcctggtcaaggactgacttcatggtttccatggcaacccagtttgctcagtgctctctt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcctggtcaaggactgacttcatggtttccatggcaacccagtttgctcagtgctctctt 448

                                                                       
Query: 237 tcagcagctgctgattacactttgaattttatttgcatccatgattaagaaggagtataa 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcagcagctgctgattacactttgaattttatttgcatccatgattaagaaggagtataa 388

                                     
Query: 297 aagactgaggtaattttttttaaaca 322
           ||||||||||||||||||||||||||
Sbjct: 387 aagactgaggtaattttttttaaaca 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)