BAC Information

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BAC

Clone NameMSMg01-208L12
Chromosome6 (Build37)
Map Location 29,872,856 - 29,873,194
singlet/doubletsinglet
Overlap geneD330017J20Rik
Upstream geneLOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik
Downstream gene1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208L12.T7 (MSMg01no208_l12.b1)MSMg01-208L12.TJ (MSMg01no208_l12.g1)
ACCAG391508AG391509
length1,435695
length of high quality
(start - end)
---339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no208_l12.b1 PHD_FILE: MSMg01no208_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:37 2005CHROMAT_FILE: MSMg01no208_l12.g1 PHD_FILE: MSMg01no208_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNNAAAAAAACAGTCGCCATCNNTTNNTGCCNGTTACCTGNANNNNN
NNNNNNNNNNNNNNNNNNNNNTTTNCCCNNNNNNNANGCGGGGNGGGNNA
NGTNNGNGTNACANNANGAGANGTTATCTCTCAGCAGAGAGAGAGGCGCG
GGGGGGGNNNNTTTTTATATATTACTATATGTATTNGCCCCCCCCCNACC
CNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTGNTTNTCCCAGCCAGNGAN
GNGAGANNAGANAGGGGGGNGNNNNNNGNGNGNNGNNNGNNNNGANNNGA
GACCGCGAGAGGGGAGGGGAGCAGGGGAGGAGGNNAAGACGAGGTGCGAG
GAGGNAAGAAAGGGAAGGAGCCACGAACACNGNACANCANAACACCCGCA
TCCACCCTCGCACGCCTCCACTATCGCATGCTTCTCGCGCGCCCCTTCGC
TCGCCCTCTTTCTTCTTCTACTTTGCGNGTCTGTCACGCTCGCGCGCGCG
NCATTTNGTTCGTCGCTTGTCTCCTCCGCGCGTCGCCACGCGTATATCCC
TCTCGCGCATCGATCTCTATCACACCAGGCCGCGATCCAGTCTATGTTGT
TCTGGTACTCGTGCGTCTATCTCTGTTTTATGTCATGCCTCGAGCGGCGC
CGGCGGCCGCGCGCGCGCGNTGAGCACGCGGGCGTGTGAGTGTACGCATC
AGTTTTTTTTATTTTTTTTTATTTTTCCTCCCCCGCACCCCCGCCCACAC
GCGCCCCGCGANGGCGAGNAGAAGNGGAGGGCGTATAGNAGTATCGTAGT
TCATGTTCATACATCGCGTCGTCGTGTTCCTGCTCTCTACTATTATAAAA
GAAATATGAACAACATACACGACGAGCGCGTGGTGCGCGAGGGGCGGTGG
GAGAGACGGCTGTTACACCCCTTTCTACCTGGATGTACAAGTGAGTGGAT
GCGCACTAGACACCGCAGCTTATGTGCGCGCGGCGTGTAGTGTGCGTCCT
CGGTTGGCTCGTCGCGTGCCACTGCGCTCGAATTCTATCGTAGTGTGCTG
NACCGACTCGCTGTCGTGACGATATCGCATACTGCAGCGCGCGACCCGGC
CGCCGCGGTTCGCTTGCTCGCGACATTGCGCACGTCGATGCCGACGCACC
ACTACTTTGGTGCCGACGCGTGTAGTTTATGAGATGTTGCGAGGTGATGT
CGCGTCGCTAGTGGTCTTGTTATCGGCTGTGCATCGTNGTTGTGTGTGCG
TGTGCGTCGCTCGGCTACGCTCCTCTCACAGCACACAACCTACGCTCCCT
ATGCATGTGCTGATTGCCATCGAACAGCACGCGTCGCCTCGCGCNACGCC
ANGCGCGTGCTGTCTGTAGCGCACCGCTGTATGTCGCGCGCNCGCGTCTC
TCGTTACAGCACGCACCCANCTGTTATATTCTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAATCAAACAGATTAGCATCTCAA
AATTGATTCCACCTATACCATAAAGCAATTGAAATTTACTTATAATCCAG
CCAACTAAGATAAAGGCTAAGAATTACCATGGAGTTAGAACAGTTGTGTT
TCAAATTCTGGGGGTGGCCAGGAACAAATCTCAACTTTAAATTTTAAATA
TGTCAATCATTAGTTCATTAATGTAAATGTAAGTATACGTGTATGTATTT
GTATGTATATGTATGTATTAGGCTAGAAAAGTCAGGAAATAGTAGTCAGG
AAGGTAAACACTGCTGAACTTTGTCCTTATTTTTAAAGTGTTGATAATGA
GATTTCATTTGCAGACCACCACAAGATACATTAAAGTATCTTCTACTCAG
ATTACACGAGTATAACATCTGCCATACTCGCTTCAGACTACCCTCCAGTA
TTATTTCTTTCTCTGGAAGTAATTACCACCATGAATTTGGTATGCATTCC
ACACACGCCCATTTTTAGATTTTTACTACCTTTGTTTGTGTCTATAAACA
GTATATCAGGGTGGGTATATGCATAGGATCCAGATTCATTTCCCAGCACC
CATATTGTGGCTCCCAACTATCCATCTCCTCAGGTCCAGGCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_l12.g1 MSMg01no208_l12.g1 CHROMAT_FILE:
MSMg01no208_l12.g1 PHD_FILE: MSMg01no208_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:37 2005
         (339 letters)



>mm_chr6_29872794_29873532
          Length = 739

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%), Gaps = 2/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatcaaacagattagcatctcaaaattgattccacctataccataaagcaattgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaaatcaaacagattagcatctcaaaattgattccacctataccataaagcaattgaaat 342

                                                                       
Query: 61  ttacttataatccagccaactaagataaaggctaagaattaccat-ggagttagaacagt 119
           ||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct: 341 ttacttataatccagccaactaagataaaggctgagaattacc-tgggagttagaacagt 283

                                                                       
Query: 120 tgtgtttcaaattctgggggtggccaggaacaaatctcaactttaaattttaaatatgtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgtgtttcaaattctgggggtggccaggaacaaatctcaactttaaattttaaatatgtc 223

                                                                       
Query: 180 aatcattagttcattaatgtaaatgtaagtatacgtgtatgtatttgtatgtatatgtat 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 222 aatcattagttcattaatgtaaatgtaagtatacatgtatgtatttgtatgtatatgtat 163

                                                                       
Query: 240 gtattaggctagaaaagtcaggaaatagtagtcaggaaggtaaacactgctgaactttgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gtattaggctagaaaagtcaggaaatagtagtcaggaaggtaaacactgctgaactttgt 103

                                                   
Query: 300 ccttatttttaaagtgttgataatgagatttcatttgcag 339
           ||||||||||||||| || |||||||||||||||||||||
Sbjct: 102 ccttatttttaaagtattaataatgagatttcatttgcag 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)