BAC Information

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BAC

Clone NameMSMg01-209F15
Chromosome6 (Build37)
Map Location 53,662,618 - 53,662,926
singlet/doubletsinglet
Overlap genenone
Upstream geneTax1bp1, Jazf1, LOC666259, LOC666516, D430007I03, Creb5
Downstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209F15.T7 (MSMg01no209_f15.b1)MSMg01-209F15.TJ (MSMg01no209_f15.g1)
ACCAG391907AG391908
length751743
length of high quality
(start - end)
315 (46 - 360)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no209_f15.b1 PHD_FILE: MSMg01no209_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:27 2005CHROMAT_FILE: MSMg01no209_f15.g1 PHD_FILE: MSMg01no209_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTCTGTGTTATCTCAGATGGTTCCTTCCTGGGATGTGGGT
TCTAGAACCAGAACAGCCCTAACCCTTTACTGGCAAGAGCTGCTCAAGAC
GCTGGTCATCTATGTCCCTTATTTCAAATAAGCATCCAACACTATTCACA
ATGCTTCGATGTTGAATGTTCCTGTGGACTCCTATGCTGAAGGAAACATG
GAAAACACCTTCCTGGCTTTAACTTTCAGATTTTCTGTCACTGGTAAAAT
ATATTTAGAGAAAGCTGCGTGTGCTTCCTGTCTGACAGATCAGTAGGATC
TGAAAAGTAGGACTTTTTACCATCCCCCCACGCTCTACAGCAGAACCATT
GCTGCTTGCCGGAGGATAACAGTCCTCATCAAGCCAGGCTTGGGCAGTGT
CTTCCTCGATCCTTAGCTTTGTTTATAGAAAGATGGGTGGATGACTTGAT
ATTGATTGATTGATTGATTGATTGATTGATTGATTGACTAACCTACTGAT
CGATTCTTATAAGCGTCTGTACATCAGGGGCCTGAACAATAGAAAACCAT
TCAGGTCCACGCAGACCAACAGTCACATTCATAGAGGAGCTGCTGTCAGG
GAGCCACAGAGACAGAAATCACCATTTCTGCATAGGAGAACAGCATTGCC
TCCTGCGCCTTTATAGCTTCCTCCTCCCCAGTTCTCTGTTTTTGAAAGTA
T
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGTTGTTCAGTATGAGGCTGAT
GTCCTGATGTCTCAGCTGGTCTTCAGTGCATGTTGGAATTCTGAAGAAGT
AGGCTCTAATGCCAGTGAAGGAACGCCTCAGCAGCAGGACAGACGGACTT
GCCAGTGAGAGCAAGGGCAAGCAGGCAAGAAGCAAAATCTTTCTTCTTCC
CTATGCTTTTATAGGCTCTCAGGAGAAGGCATGTCTCTCATTAAGTGCAG
ATCTTCCTACTTCAAATGATGCAATCTAGAAAAGTCCTTCATAGGCATAA
CCGGCAGCTGGCTTGTATTTTATCCGATCCANTCCCAGTCAAGTTGACAA
CCAAGATTAGCAATCACAGTCTCAAAACCATGAAACTTTTTTTCATTAAT
GTGTGTGTGTGTTCTTAAATACACAAACACAACCTTCTCCATTTGTATAA
CATTACTAGTATGTATGTTTTCAGGGTTGACCAAATGTCATGGCCTTCCC
AGTGGAAGACTGTTCATCCCACTCTCAGAACTCCTTCATTGCCTGCCATT
CTTTGACGAGGGTTGAGGCCTCATGAGCCTTGGCCTAGGTGTGGGAGGCC
TGTGAGGTGGGTTTCTAATGGGAGGATCAGGCAGACTCCTCAGGCTAGAC
CCTCGAAAAGGGTTTGCAGAATCTCGAGGCTCAAGTTTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_f15.b1 MSMg01no209_f15.b1 CHROMAT_FILE:
MSMg01no209_f15.b1 PHD_FILE: MSMg01no209_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:27 2005
         (315 letters)



>mm_chr6_53662414_53663128
          Length = 715

 Score =  536 bits (277), Expect = e-157
 Identities = 301/309 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttttctgtgttatctcagatggttccttcctgggatgtgggttctagaacc 64
           ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct: 205 gaattctttttttctgtgttatctcggatggttccttcctgagacgtgggttctagaacc 264

                                                                       
Query: 65  agaacagccctaaccctttactggcaagagctgctcaagacgctggtcatctatgtccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaacagccctaaccctttactggcaagagctgctcaagacgctggtcatctatgtccct 324

                                                                       
Query: 125 tatttcaaataagcatccaacactattcacaatgcttcgatgttgaatgttcctgtggac 184
           |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tatttttaataagcatccaacactattcacaaagcttcgatgttgaatgttcctgtggac 384

                                                                       
Query: 185 tcctatgctgaaggaaacatggaaaacaccttcctggctttaactttcagattttctgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctatgctgaaggaaacatggaaaacaccttcctggctttaactttcagattttctgtc 444

                                                                       
Query: 245 actggtaaaatatatttagagaaagctgcgtgtgcttcctgtctgacagatcagtaggat 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 445 actggtaaaatatatttagagaaatctgcgtgtgcttcctgtctgacagatgagtaggat 504

                    
Query: 305 ctgaaaagt 313
           |||||||||
Sbjct: 505 ctgaaaagt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)