BAC Information

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BAC

Clone NameMSMg01-209J15
Chromosome6 (Build37)
Map Location 88,868,828 - 88,989,721
singlet/doubletdoublet
Overlap genenone
Upstream gene8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
Downstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209J15.T7 (MSMg01no209_j15.b1)MSMg01-209J15.TJ (MSMg01no209_j15.g1)
ACCAG392068AG392069
length751741
length of high quality
(start - end)
518 (43 - 560)243 (81 - 323)
definitionCHROMAT_FILE: MSMg01no209_j15.b1 PHD_FILE: MSMg01no209_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:47 2005CHROMAT_FILE: MSMg01no209_j15.g1 PHD_FILE: MSMg01no209_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,868,828 - 88,869,338)(88,989,479 - 88,989,721)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTACAGAATGTCCCGTGTTTGCTGAATAATTTTACTTCTTGGAGG
AGGAAGCTATCTAGCGGCACAGCACCGCCAGGCCAGAGCTGGGCACAGGT
GGCACACGGGAACCAATCAGCCTCTGAACACCTGGATCCACCTGTGCCGG
GGCAGGGACCAGCTGGGATTCGCAGGCACAAGAACCAGTGCAGCTGCCTT
CTAGCGCAAGCCACTTCTGAGTTGAGCTCTCAGCACTTGAACCTTGAAGA
GCCCAGCGGATGTGAAAGAGAGGGATACGAAAGCGATCCCTAGCCCCACC
TGAAGAGGGGTGGACACCAAGGCAGGTTTGAAGGTGAGCAAGGGGTGGGT
GGGGCAGGAGGGAGAACCAGGACCGCACTGATTTAAATGAGGCTAGACCC
TAGGAGTCTTGGCTCCGATAAGGCCCCTAACAATATCTCAGCATTTGCTA
ATTATTTCCATCCATGCAAATGGCAGTGATCCTCTTAAGACTTGACAAAG
AGATTTCTGAAAACAGCAGACGCCAAATTAGATGTTATTAGCAGGGCAAG
AAATGATCATACGAGATGTCTCAACAATCACACGCTTCGGAGGACGCGAC
CGAAGGCATCTTACAGGCTCTGTGCAAAATCACCCTTCCAGGAAGATGTA
GTTACGGCAGCATAAACTAGATAGGGCTTCAGGCTTTGACACTGAAGGGA
T
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGACATGGTGGACATCA
ATGGGGAGCTTCAGGGACAGGGTACCGGTGACAAGAGAAAAGAGATTCAA
GAGGTATCAGAACAAGCCATCTGTAAAACTAGGAAATGATGTTGCTATTT
TAAAATTGAGTCGAAGACCTCATCAAAATTAGATGCTCCAAGAACAGGTA
AAATATATTTACCAACCATACATGTGACTAAGGATCAAAAAGCAGATTAA
ACATCCCTATAGAAATAGACAAAGTATTTTTGGGTGTGGCGGTGCAGGCC
TGGAGTGCCAGTTTTATTTAGCTCCTAAGCAGGACCCTGTGAATTCAAGG
TATGGCTGTGCTANAGAGGCNGATAAAGGCCAGCNTGAAAACTTAGTGGG
ACGTTGTCATAAGCTGAAAGATGGGCAGGATTTAGTTCAGTGATAGAGCA
TCTGCCTGGTGTTCATCTAGCATGCGTAGGCCCTGTACTCAATATCCAGT
AGTTAGAAAAAAAAATCAAGAGTTCAAGAAAAGTTCAAAGAAAAGGTGGA
GGGGAAAGAAGCCTGTGAATGATGCTTCGGTCATTAGTGTCATCAGTCCC
TGGAGGGACATATGTTCAGATGCACCCCCTATCAGATACCCTTCAGTGTA
AAAACTCACACTGCTGCTGAAGACACAGTGCTCCTGAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_j15.b1 MSMg01no209_j15.b1 CHROMAT_FILE:
MSMg01no209_j15.b1 PHD_FILE: MSMg01no209_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:47 2005
         (518 letters)



>mm_chr6_88868621_88869538
          Length = 918

 Score =  919 bits (475), Expect = 0.0
 Identities = 502/511 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattctacagaatgtcccgtgtttgctgaataattttacttcttggaggaggaagcta 67
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattctacagaatgtaaagtgtttgctgaataattttacttcttggaggaggaagcta 267

                                                                       
Query: 68  tctagcggcacagcaccgccaggccagagctgggcacaggtggcacacgggaaccaatca 127
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tctagcggcacagcagagccaggccagagctgggcacaggtggcacacgggaaccaatca 327

                                                                       
Query: 128 gcctctgaacacctggatccacctgtgccggggcagggaccagctgggattcgcaggcac 187
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 328 gcctctgaacacctggatccacctgtgacggggcagggaccagctgggattcgcaggcac 387

                                                                       
Query: 188 aagaaccagtgcagctgccttctagcgcaagccacttctgagttgagctctcagcacttg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aagaaccagtgcagctgccttctagcgcaagccacttctgagttgagctctcagcacttg 447

                                                                       
Query: 248 aaccttgaagagcccagcggatgtgaaagagagggatacgaaagcgatccctagccccac 307
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 aaccttgaagagcccagcggatgtgaaagagagggagacgaaagcgatccctagccccac 507

                                                                       
Query: 308 ctgaagaggggtggacaccaaggcaggtttgaaggtgagcaaggggtgggtggggcagga 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctgaagaggggtggacaccaaggcaggtttgaaggtgagcaaggggtgggtggggcagga 567

                                                                       
Query: 368 gggagaaccaggaccgcactgatttaaatgaggctagaccctaggagtcttggctccgat 427
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gggagaaccaggacggcgctgatttaaatgaggctagaccctaggagtcttggctccgat 627

                                                                       
Query: 428 aaggcccctaacaatatctcagcatttgctaattatttccatccatgcaaatggcagtga 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaggcccctaacaatatctcagcatttgctaattatttccatccatgcaaatggcagtga 687

                                          
Query: 488 tcctcttaagacttgacaaagagatttctga 518
           |||||||||||||||||||||||||||||||
Sbjct: 688 tcctcttaagacttgacaaagagatttctga 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no209_j15.g1 MSMg01no209_j15.g1 CHROMAT_FILE:
MSMg01no209_j15.g1 PHD_FILE: MSMg01no209_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:47 2005
         (243 letters)



>mm_chr6_88989279_88989921
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggacatggtggacatcaatggggagcttcagggacagggtaccggtgacaagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 443 caaggacatggtggacatcaatggggagcttcagggacagggtacaggtgacaagagaaa 384

                                                                       
Query: 61  agagattcaagaggtatcagaacaagccatctgtaaaactaggaaatgatgttgctattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agagattcaagaggtatcagaacaagccatctgtaaaactaggaaatgatgttgctattt 324

                                                                       
Query: 121 taaaattgagtcgaagacctcatcaaaattagatgctccaagaacaggtaaaatatattt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaaattaagtcgaagacctcatcaaaattagatgctccaagaacaggtaaaatatattt 264

                                                                       
Query: 181 accaaccatacatgtgactaaggatcaaaaagcagattaaacatccctatagaaatagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263 accaaccatacatgtgactaaggatcaaaaagcagattaaacatcccaatagaaatagac 204

              
Query: 241 aaa 243
           |||
Sbjct: 203 aaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)