BAC Information

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BAC

Clone NameMSMg01-211F18
Chromosome6 (Build37)
Map Location 129,182,600 - 129,182,909
singlet/doubletsinglet
Overlap genenone
Upstream geneTead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d
Downstream geneCd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211F18.T7 (MSMg01no211_f18.b1)MSMg01-211F18.TJ (MSMg01no211_f18.g1)
ACCAG393114AG393115
length706783
length of high quality
(start - end)
317 (23 - 339)97 (128 - 224)
definitionCHROMAT_FILE: MSMg01no211_f18.b1 PHD_FILE: MSMg01no211_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:26 2005CHROMAT_FILE: MSMg01no211_f18.g1 PHD_FILE: MSMg01no211_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACGTTTCCCGAAACAGG
ATTTCCCTATTTTGTAGAGAACTTCCGTGATTGAATCTTCCTGCTTCTGG
AAATAAAATGGGTAGTCCCTTGCATACAAAGCTTGGAGGGTGTCTCTCAT
TCTTCTCTTCTTCTGCTTTTTCTCATCTACCTGAGAATAATTTTAAATGG
ATCGAAGGAATGAATGTCAGCCACCAAACTGAGAAGTTGACTTGCCTTTG
ATCACCTGTAACTTTGTTAGAATAATAAATTCTGTAGAAAACTAATCTCT
GTGTTGTTTGTCTTTTGTTGTTTTGTTTTTTAAGTGTTTTTTTTAGCTTC
CCCCCCCCTTGGCTAAGGTTTGAATACTAAATATCTCCCTGAGGCCAATG
TGACATGATAGGCAACCTGTGACACTGTTGGTTGGTAAGGAGCAGGAACT
TAAAGATCTGGGCCTTACTGGAAGCAAACTAAGTCATTGGTGACTGTGCA
TATGACAGCTCTCACCTTAAAGGCAACAATATTTAGCTCACTGTCACACC
ATTTTGAGCGATTATGGTTTATGAACATAGATCTAGGTTACCCCACTTTT
CATGTTCCAATTCATATATTTCCCTATGATGCCTACCGTCGCCTTTTACC
TCCTGTGAGCTCCATTTTATTTGCCTACCAACACGACCGAGTTTGGTTTT
CAGATT
NCCCTCCCTTCTCCTTTTCCTCCCCCATTCCCTTCTCTCCTCTNCNNNNC
CTCTATGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAACAGTTGGAGTTGGGGAGTC
TCTGACTCTTTTGCCTGCTCATAAAACCCTTTTCTCCTGCTGAGGTGCCT
TATCCAGCCTTTATAAAAGGGTTTGTGTCCAGTCTTATTGCATGTTATTA
TCCTGTATTCAGTTGATATCAAGGGGAGGCCTGCTCTTTTCTGAAGGGAA
ACAAAGAAGGAGGGGACCTGGGTTAGCAGGAAGGTGGTGGGTGAAACTGA
AAGGAAAGGAAGGAGGGAAGGTTGTTTCCAGGATGTTTTGTATGACAGAA
GAACATAGAATTTAAATAATTTCCGAAGCGGGTCCCTGGTGTGTACAGGA
CTGACAGGAAGGCCCGCCTTTCCCCATGAAAAAAACATCAAAGCCGGGAG
CGGGGGGACGTGGCTCCAGAGGACTTCCCTTTGCTCATTTCACCTCCAAG
ACCTTGGAGTTTGTTCCTGCTCACCAGTTTCATTGTTGCCTGCCCTATGC
ACATTGTACCCCCAAAGGATTTACCCCAGTTCAAAACCCCCCTGGACTCC
GGGGGTTCTCCTTGTTATACCCCGGTCTCTTCCCTTTATTTACCCATTCT
CTTTCTCCTCGTAACCTCTCCCCCTGATTTCCCATTTATCCCCCTTCTTC
CTTTTTTTATTCCCTCTCTCCGTACATCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_f18.b1 MSMg01no211_f18.b1 CHROMAT_FILE:
MSMg01no211_f18.b1 PHD_FILE: MSMg01no211_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:26 2005
         (317 letters)



>mm_chr6_129182396_129183112
          Length = 717

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacgtttcccgaaacaggatttccctattttgtagagaacttccgtgattgaat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 514 gaattccacgtttcccgaaacaggatttccctattttgtagagaacttccatgattgaat 455

                                                                       
Query: 65  cttcctgcttctggaaataaaatgggtagtcccttgcatacaaagcttggagggtgtctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cttcctgcttctggaaataaaatgggtagtcccttgcatacaaagcttggagggtgtctc 395

                                                                       
Query: 125 tcattcttctcttcttctgctttttctcatctacctgagaataattttaaatggatcgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcattcttctcttcttctgctttttctcatctacctgagaataattttaaatggatcgaa 335

                                                                       
Query: 185 ggaatgaatgtcagccaccaaactgagaagttgacttgcctttgatcacctgtaactttg 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 334 ggaatgaatgtcagccaccaaactgagaagttgacttgcctttaatcacctgtaactttg 275

                                                                       
Query: 245 ttagaataataaattctgtagaaaactaatctctgtgttgtttgtcttttgttgttttgt 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 274 ttagaataataaattctgtagaaagctaatctctgtgttgtttgtcttttgttgttttgt 215

                     
Query: 305 tttttaagtg 314
           ||||||||||
Sbjct: 214 tttttaagtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)