BAC Information

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BAC

Clone NameMSMg01-212M16
Chromosome6 (Build37)
Map Location 68,880,712 - 68,880,899
singlet/doubletsinglet
Overlap geneIgk, Igkv13-85
Upstream geneEG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459
Downstream geneIgkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212M16.T7 (MSMg01no212_m16.b1)MSMg01-212M16.TJ (MSMg01no212_m16.g1)
ACCAG394019AG394020
length705738
length of high quality
(start - end)
662 (44 - 705)188 (153 - 340)
definitionCHROMAT_FILE: MSMg01no212_m16.b1 PHD_FILE: MSMg01no212_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:39 2005CHROMAT_FILE: MSMg01no212_m16.g1 PHD_FILE: MSMg01no212_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGAACTAGGATGCTTCTAGGCATGGACCACTATACATGTGTCAAGA
AAATGTTGCATATGTTATCAACATCATTGATAAATTATCTTCTGTAAAAA
GAAATAAAACTCTCATATGACAGATTTATGATAGAAGAAGTGATGGGAGA
AATTCAACTCTTAGAGATACCAGATATGTGAGACTAAGGGCTAGGGAAGC
TTCTTGTATGTGTAACATAGGCTTCATGCTTTGCATGAGAGTGAAGACTC
TTAGAGACACCTGTGATTTTGTGTCATGGGGTTGTAGGAGTGAGGGAGAG
TTGCTGCTTTTAAAATAATCAGCTATTCCAGGGTAATTAAGCATTTCTTA
AATCTTCTCCCCAGAAAATCAAAAGCCAAAACCAAAATCAAATCAAACAA
ACCAACCAAACATACAAAAACCAAAAAAGTATCTCATACATCATGATACA
TCCTTTGATTAGTGCCTTAAGTTACCTTAGGCATCCTTGTGATTCCACTT
CATGAAGAAAATAGACAACTATCAAAAATAGTTAATATGTTTCCATCAAA
ATAGGAAAATTCGAATCTCCCCATTTGTAGCTGCATAGTTTAGACATGAC
ATTACTTTACTTCATGAAATAAAGGTGGATATTTATTAGCCCTCACGAAT
TGGTT
AGTTATTCGNNNNNNNACNNNNNNNNNTTCGATGAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCCGAGGAATTC
CAATGTCATTCTTCCTTACCTGGGATTCCGAACAGCAGGTTTTAGCCGAA
GATGAGAAGGAAACTTCATGTTTCTGCTGTGACCTGACATTGATTCTTGC
ACTGGATGTGGCCAGACTAATAAGAAGTTCTAATTAATTTCAATGTCTAC
ATGCAAATCAACTAGGCCTGGACTGATGTTATCTCAGTAACTCAACTGGG
TGTGTCCAGGTGTCCCAAATCAGACCAGAATATTGCATCCTTTTTTTACT
GGAAATGGNGNATTTTCTTACAAAATATATGGNATANCTTCCCNNAGCAN
GGCCCCCNNANAAGNANAAAGANTAAATTCATTGTTTTTCCATTTTAATA
AAGAACAAAAGAAACAGCGGGGGGGGGGGGTGACATTAATAAATTAATAA
AAATGGACCTTCTTCAAAGGGTTTTTTTTTTTATTTCCAAGGAATCCAAT
AAGGGAAATGGTCCCACTTGGAAAAAAATATAATAAAAAGGGGTTTTTCA
AAAAAAAGAAAAAATTTTTAAAAAAATTTTTGGAAAAATGGGGAAACCCT
TTTTTTTTTTTATAAACAAAAAATTTTGGGGACACAAAACCCCAAAAAAT
TTTAAAAAATTTTGTTTTTTTGGGGGGGGGGGAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_m16.g1 MSMg01no212_m16.g1 CHROMAT_FILE:
MSMg01no212_m16.g1 PHD_FILE: MSMg01no212_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:39 2005
         (188 letters)



>mm_chr6_68880512_68881099
          Length = 588

 Score =  333 bits (172), Expect = 5e-96
 Identities = 184/188 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaggaaacttcatgtttctgctgtgacctgacattgattcttgcactggatgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 201 tgagaaggaaacttcatgtttctgctgtgacctgacattgattcttgcactggatttgtc 260

                                                                       
Query: 61  cagactaataagaagttctaattaatttcaatgtctacatgcaaatcaactaggcctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cagactaataagaagttctaattaatttcaatgtctacatgcaaatcaactaggcctaga 320

                                                                       
Query: 121 ctgatgttatctcagtaactcaactgggtgtgtccaggtgtcccaaatcagaccagaata 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaggttatctcagtaactcaactgggtgtgtccaggtgtcccaaatcagaccagaata 380

                   
Query: 181 ttgcatcc 188
           ||||||||
Sbjct: 381 ttgcatcc 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)