BAC Information

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BAC

Clone NameMSMg01-212P06
Chromosome6 (Build37)
Map Location 128,570,521 - 128,570,807
singlet/doubletsinglet
Overlap geneKlrb1a
Upstream geneEfcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546
Downstream geneEG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212P06.T7 (MSMg01no212_p06.b1)MSMg01-212P06.TJ (MSMg01no212_p06.g1)
ACCAG394121AG394122
length796722
length of high quality
(start - end)
250 (52 - 301)287 (82 - 368)
definitionCHROMAT_FILE: MSMg01no212_p06.b1 PHD_FILE: MSMg01no212_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:51 2005CHROMAT_FILE: MSMg01no212_p06.g1 PHD_FILE: MSMg01no212_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAACAGTTTGAGTTCGAGTGTCTCTGACTCTTTTCCCT
GCTCATGGGAATCTTTTCCTCCTGCTGTACTGTCTTATCCAGCCCTGGTA
AGAGGGTTTGTGCCCAGTCTTATTGCATCTTGATATCCTGTATTCAGTTG
ATGTCACTGGGAGGCCTGCTCTTTTCTGAAGGGAAACAAAGGAGCAGTGG
ATGGGGGAGTGGAGAGGAAGGGGAACTGGGAGGAAAGGAAGGAGAGAAGT
CTGTTTTCACACCGCGCCGATTTTTTTTTAGACACATCCCAGCCACGCGA
TAATGAAGATTTTTTTTTTTTCCCCCCCCCCCCCCCCCAAATTAGTATAG
TTTTGACGCTATTTTTCTTTTCTCTAAAAAAAAAAAAAATAAATTTCCCG
CGAGGGTGGCGAGCTTTTTCAATCTTCCCTTCCTAATAGATACTTTAGAA
CTTTCACACACATCTGACTGTTACTTACGCCGTTCTACCATTACTTGTAA
AAATTTTTCTCCTGGACCTACGGAACAATATATTATGGCTAATCCCCCTT
CCTCTATCTGTTTTCTATTTTCTGCTCGTATTCCCCTTTTTCTGCTATTT
CTATATCTATTTCAATTTTACTTGCGTATTTAATGAATCGTTCACCCTTG
TCTTATCCCCCTCTTTTTTTATGCTATATCGATTCGTATCTTAACTGTTA
TCTATCCGATTCCTCCACCGTCTATTTACTTCCTTAATTAAAACAG
NCCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAGATGAACTCTCCGT
TAGGTTCAGATGTTTGCTTTGATAAAGCAGGACTGAAAGAATAATACTTA
TGTATGTATTATGCACAAAGGAGCATCGGCTGAATCAATCTCGATACATG
TGATTGAGTGCTGTCCATTGGCTGAATCAATCTCGATACATGTGATTGAG
TGCTGTCCAAAAGTAAATGGTATGTTCTATTTTGGGAAGGGAGTCAGAGC
ATCTCTAAGGAAGATCCTTTAATCAAGAGATGCTTTTGATGCTCAGTTTT
GTGGTACTGATGATTTTCAGTGCTCCTGACCTATGATTCTATTCCTGGAC
ATGAAGTCTTCTTCACTGTTGTCTACAAAGATCTCCATTTTGAATCAAAG
GCGTGATATCCAAGGGGAAGCAACTTGTGATTTCAGACGGTATTTCAGTA
TTTCAGTTGTGTTAGTCCCCCCTTATTGGCTGAATTCCAAACACCCTAAT
GGTTAGATGAACTGAAACTGTGGTTAGCACCAGCCTCTATATATACACAC
CCATGCACACACATTAAGCATACACTAAATACAATATGGCTGTAGCTTTC
ACAGTGTCCCTTCCTTAAATAGAGTACTTTCAAAATTTCTTTTTGTGGGG
CTCTGTTATGTTTCTAAGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_p06.g1 MSMg01no212_p06.g1 CHROMAT_FILE:
MSMg01no212_p06.g1 PHD_FILE: MSMg01no212_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:52 2005
         (287 letters)



>mm_chr6_128570321_128571007
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgagatgaactctccgttaggttcagatgtttgctttgataaagcaggactgaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagatgaactctccgttaggttcagatgtttgctttgataaagcaggactgaaagaa 260

                                                                       
Query: 61  taatacttatgtatgtattatgcacaaaggagcatcggctgaatcaatctcgatacatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatacttatgtatgtattatgcacaaaggagcatcggctgaatcaatctcgatacatgt 320

                                                                       
Query: 121 gattgagtgctgtccattggctgaatcaatctcgatacatgtgattgagtgctgtccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgagtgctgtccattggctgaatcaatctcgatacatgtgattgagtgctgtccaaa 380

                                                                       
Query: 181 agtaaatggtatgttctattttgggaagggagtcagagcatctctaaggaagatccttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaatggtatgttctattttgggaagggagtcagagcatctctaaggaagatccttta 440

                                                          
Query: 241 atcaagagatgcttttgatgctcagttttgtggtactgatgattttc 287
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 atcaagagatgcttttgatgctcagttttgtggtactgatgactttc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)