BAC Information

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BAC

Clone NameMSMg01-213F09
Chromosome6 (Build37)
Map Location 110,852,831 - 110,853,155
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213F09.T7 (MSMg01no213_f09.b1)MSMg01-213F09.TJ (MSMg01no213_f09.g1)
ACCAG394367AG394368
length725723
length of high quality
(start - end)
329 (42 - 370)287 (432 - 718)
definitionCHROMAT_FILE: MSMg01no213_f09.b1 PHD_FILE: MSMg01no213_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:20 2005CHROMAT_FILE: MSMg01no213_f09.g1 PHD_FILE: MSMg01no213_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTTAAGCCTTACAGATCTATGACATGAACTCTTGCCTTAAACTTACTAT
GAACGTTTGGATTGTAAAACCCCCTTAGAAACCTATGTGATCAATTATCC
TGAGGAGGTATAAAAAATAAAAACAAAAATAAAGTATTGATTTAGCCCTT
CTCTGCTTCAGCCGGTATGCATATGTTTCTGTATGTACCTCACTTTCTTT
CATTCTTCCTTTTTTCTTTTCTCTCTGGGTCACTGTCTTAGTCAGGGTTT
ATATTCAAGTTGACACAAAACCAACCAGTATACTCACTACTAGTTAAGCA
AATCCAAGACTCTCTTTTGGGCAGGGAAAGACCTAGGTCAAGGAGTAAAG
AACTTGTCTTAGTCAGGCCCCCTATTCCTGGACAAAACACCATGACCAAG
AATCAAATTTGGGAGGAAAAGGTTTATTCAGCTTACACTTCCACATTGCT
GTTCATCACTGAAGGAAGTCAGCACTGGAACTCAAGCAGGTCAGGAAGCA
GGAGCAGATGCAGAGGCCATGGAGGCTTGCTTCCTCTGGCTTGCTCAGCC
TGCTCTCTTATAGAATCAAGACTACCAGTCCAGAGATGGCACCACCCACA
AGGGGACCTCCCCCCTTGACCACTAGCTGAGAAAATTTCTTACATTTCCA
AGAGACTAATGATCTCTTGGATGTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCAGCTTTGCAGCTACTCTTTACCT
ACTGAGTCACCTCACTTGCTCCCAAACTCAAGAACAATTAACCATAAAGT
ATTGAATGTTTTCATTTTTTTTTTAGTTGGGATAAATTTTTCATAAAAAA
TGTACTCAGGTAAGCATACAGCCTACATTTTGAAGCTCTGATCAACACTC
CAATCAAAAGTACAACTTTTGTACCATCACCAAATTTAATTGTCTTGTTA
CCCCTTTCTTCTTTCATCTACTCACTAACTGACTATCACTAGTCAGCTTG
CAGAAATTATTATCTTCTCCCCCCTCCACCCATGGAACCAAAGACTGCTT
TCTAATAGGCCATTTTCCGCCACAGATATCCATCCAGGATTCAAGGTTTA
GCAGAATGTTTTTATTGACGATATACTGCTGCATAGTGTTGCTCTGTTTG
AATTCATCATAGTTTCTATGTATCCCTAACTGGCAGGCATTTGGATTTCT
TCCAGTTCAGGGATATTAAGATTAAAACTGTTAGAAAATTATCAATGGAC
ATATGACTTATGTCCTCTTGGGTAAAGATGTAACAGTATACTGCTGGGCT
TTAGGGTTGAGGTATATTTACCCTCCTGTGAAACCACTAAGTTTTTTTTA
ATTTTTTCAATTTTTTATTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_f09.b1 MSMg01no213_f09.b1 CHROMAT_FILE:
MSMg01no213_f09.b1 PHD_FILE: MSMg01no213_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:20 2005
         (329 letters)



>mm_chr6_110852756_110853483
          Length = 728

 Score =  571 bits (295), Expect = e-167
 Identities = 318/329 (96%), Gaps = 7/329 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttaagccttacagatctatgacatgaactcttgccttaaacttactatgaac 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggaattccttaagccttatagatctatgacatgaactcttgccttaaacttactatgaac 341

                                                                       
Query: 64  gtttggattgtaaaa---cccccttagaaacctatgtgatcaattatcctgaggaggtat 120
           |||||||||||||||       ||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtttggattgtaaaaggg----cttagaaacctatgtgatcaattatcctgaggaggtat 285

                                                                       
Query: 121 aaaaaataaaaacaaaaataaagtattgatttagcccttctctgcttcagccggtatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaaaaataaaaacaaaaataaagtattgatttagcccttctctgcttcagccggtatgca 225

                                                                       
Query: 181 tatgtttctgtatgtacctcactttctttcattcttccttttttcttttctctctgggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 224 tatgtttctgtatgtacctcactttctttcattcttccttttttcttttctctctggctc 165

                                                                       
Query: 241 actgtcttagtcagggtttatattcaagttgacacaaaaccaaccagtatactcactact 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 164 actgtcttagtcagggtttctattcaagttgacacaaaaccaaccagtatactcactacg 105

                                        
Query: 301 agttaagcaaatccaagactctcttttgg 329
           |||||||||||||||||||||||||||||
Sbjct: 104 agttaagcaaatccaagactctcttttgg 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 728
Length adjustment: 9
Effective length of query: 320
Effective length of database: 719
Effective search space:   230080
Effective search space used:   230080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)