BAC Information

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BAC

Clone NameMSMg01-213H14
Chromosome6 (Build37)
Map Location 70,482,026 - 70,482,334
singlet/doubletsinglet
Overlap geneIgk
Upstream geneGm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12
Downstream geneIgk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213H14.T7 (MSMg01no213_h14.b1)MSMg01-213H14.TJ (MSMg01no213_h14.g1)
ACCAG394455AG394456
length717712
length of high quality
(start - end)
314 (42 - 355)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no213_h14.b1 PHD_FILE: MSMg01no213_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:30 2005CHROMAT_FILE: MSMg01no213_h14.g1 PHD_FILE: MSMg01no213_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAATACTCGGAATTTGTATGTTTATTACACTCACAAAATCTCATTTCC
TCATCTGTATTTTATGCACCAGAGGGTGGTCTCAGATATTCTCAAAGACC
TGAAACAGTTGCCAGAGGCAGCATCCATGAGGTCTGAGAATTGGGAGTAA
CCTGAAGCAGAGAAAAATGAGCTGGGTTGGCCTTGTCTAGAACTATCTGA
AAAATAAAATCTGGAATCTTGTGGCTTCTTCACTCAAAATCTATATGTCA
CTGAAAAAAAAAACCAAAACAAAACTATTTTTGTTGTCTCCTTAGCAATG
AGGAATATCATTTTATGCCCCCCCCCCACAGGTACCCAGCTTTCTATGAC
TGTACCATGAGTCCTCACATCACAATTCTCACTGAAGTGATGTGTGCCTC
TCACATCTCTCCTATACTCCATTCTGTTTTCTGTAGCTGAATAACACAAG
CTGAGGGTTTTTTTTAACATGTTTGAGTATGTATTGTTTGTTGGTAGAAA
TGTTTGAGAAGGATTAGGAGTTGTAGCCTTGTTGGAGGATGCGTGTCACT
GACCGGTTCCATTTTCAGTGTCCTTTCCCCGTTTTTCGTTCTTATATTAC
GATTGTGCCACTTCCCCTTTCACTGCCTAGCTTTTTCCCTGCCTCATCTT
ATTCTACTCTATTCTTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACCTCTTTAGCAGTGTTCTCCTGTATTT
CTTTAAGTGAGTTATTAATGTCTTTCTTGATGTCCTCTACCCGCATCAAG
AGATATAATTTTAAATCTGAGTCTTGCATTTCGGGTGTGTTGGGGTATCC
AGGACTGGCTAAGGTTGGAGTGCTGGGTTCTGATGATGGTGAGTCATCTT
GGTTTCTGTTAGTAAGATTCTCACATTTACCTTGTGCCATCTGGTAATCT
CTGGAGTTAGTTGGTATAGTTGTCTCTGGCTGGAGCTTGTTCCTCCTGTG
ATTCTGTTATTCTCTGTCACCACACCTGGGAGTGTATCTCTCCCCTGAGT
TTCAGTGATCAGAGCACTCTCTGCCGGCAAGGTCTCCTCTTGTAAGGAAG
GTGCACAGATATCTGGCATTTGGATCTGCCTGCTTTATTGAAGATGAAAG
CCAGAAACAGGGCCTGTCCCAGAAGCTGTGTCACTTCTGGCTGTCCCAGA
AGCTGTGTAGTTTCTGTAGTCTGCACTCTCACCTGCCCAGACTAGTCTCT
GAGGGATAGGGTACCCAAGATAGCTACCCAGGTGCCCCGGCAGAGCCCTC
CTGAGGAGGGTGTACACCTCTCCTCTTGCAGGGAAGATGCCAGATGTCTG
GAGCCCGAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_h14.b1 MSMg01no213_h14.b1 CHROMAT_FILE:
MSMg01no213_h14.b1 PHD_FILE: MSMg01no213_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:30 2005
         (314 letters)



>mm_chr6_70481822_70482534
          Length = 713

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaatactcggaatttgtatgtttattacactcacaaaatctcatttcctcatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaatactcggaatttgtatgtttattacactcacaaaatctcatttcctcatc 264

                                                                       
Query: 65  tgtattttatgcaccagagggtggtctcagatattctcaaagacctgaaacagttgccag 124
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtattttaggcagcagagggtggtctcagatattctcaaagacctgaaacagttgccag 324

                                                                       
Query: 125 aggcagcatccatgaggtctgagaattgggagtaacctgaagcagagaaaaatgagctgg 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcagcatccatgaggactgagaattgggagtaacctgaagcagagaaaaatgagctgg 384

                                                                       
Query: 185 gttggccttgtctagaactatctgaaaaataaaatctggaatcttgtggcttcttcactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttggccttgtctagaactatctgaaaaataaaatctggaatcttgtggcttcttcactc 444

                                                                       
Query: 245 aaaatctatatgtcactgaaaaaaaaaaccaaaacaaaactatttttgttgtctccttag 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 aaaatctatatgtcactgaaaaaaaaaac-aaaacaaaactatttttgttgtctccttag 503

                     
Query: 305 caatgaggaa 314
           ||||||||||
Sbjct: 504 caatgaggaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)