Query= MSMg01no213_k09.b1 MSMg01no213_k09.b1 CHROMAT_FILE:
MSMg01no213_k09.b1 PHD_FILE: MSMg01no213_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:44 2005
(318 letters)
>mm_chr6_23916173_23916889
Length = 717
Score = 578 bits (299), Expect = e-169
Identities = 311/315 (98%), Gaps = 1/315 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaccattgctgcctgcccccactgtatctaagtcactcaccaagaccagggggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccattgctgcctgcccccactgtatctaagtcactcaccaagaccagggggc 263
Query: 64 actgcataaagggcaccagatttactttcaagctactaataatttgatgtgtacaaagtg 123
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actgcataaagggcaa-atatttactttcaagctactaataatttgatgtgtacaaagtg 322
Query: 124 aatgatacttgcaggtgccagtctgcaatgctcacggggttttttccttattccactgct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatgatacttgcaggtgccagtctgcaatgctcacggggttttttccttattccactgct 382
Query: 184 gctgccaatgggtttctaaacgtttgtgcccaacacttagaaacatacctttctcaattc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctgccaatgggtttctaaacgtttgtgcccaacacttagaaacatacctttctcaattc 442
Query: 244 cagtaagcacaacacactcactgcgaaagcagagtgagccaaagatacaataaagttttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 443 cagtaagcacaacacactcactgcgaaagcagagtgagccaaagatacaataaagttgtg 502
Query: 304 aaaactgaacaacag 318
|||||||||||||||
Sbjct: 503 aaaactgaacaacag 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_k09.g1 MSMg01no213_k09.g1 CHROMAT_FILE:
MSMg01no213_k09.g1 PHD_FILE: MSMg01no213_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:44 2005
(288 letters)
>mm_chr6_23976445_23977132
Length = 688
Score = 487 bits (252), Expect = e-142
Identities = 279/288 (96%)
Strand = Plus / Minus
Query: 1 ctgtatttattgtatgtttcacacaaatttaaatacagtaaccaggagaggagagacttc 60
|||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 488 ctgtatttattgtatgcttcacacaaatttaaatacaggaaccaggagaggagggacttc 429
Query: 61 ctttaagttatatctctaattcctgaagcagtagctgcatcaaagtggtactggatattt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctttaagttatatctctaactcctgaagcagtagctgcatcaaagtggtactggatattt 369
Query: 121 gttttataaaaaagaatgatcttaattttttctttaacattaaagatattaagaaaatat 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 368 gttttataaaaaagaatgatcttaattttttctttaatattaaagatattaagaaaatat 309
Query: 181 taatatcagatgtacattaagctacttaatttcaatattataagtatacatatatcacag 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 308 taatatcagatgtacattaagctacttaatttcaatattataagtatacacatatcacag 249
Query: 241 taggtataaatgtctatgttagtgtgtatgtacatgggtgtttagaac 288
||||||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct: 248 taggtataaatgtctatgtcagtgtgtatgcacatgggtatttagaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
