BAC Information

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BAC

Clone NameMSMg01-214K04
Chromosome6 (Build37)
Map Location 67,095,685 - 67,096,003
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik
Downstream geneEG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214K04.T7 (MSMg01no214_k04.b1)MSMg01-214K04.TJ (MSMg01no214_k04.g1)
ACCAG395201AG395202
length724815
length of high quality
(start - end)
322 (45 - 366)54 (189 - 242)
definitionCHROMAT_FILE: MSMg01no214_k04.b1 PHD_FILE: MSMg01no214_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:01 2005CHROMAT_FILE: MSMg01no214_k04.g1 PHD_FILE: MSMg01no214_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATATATAGTGAATAGCTTGCTGTGAACTCCTGGAGATCTGTCT
GTCTCTTCCTCCCAAGTGCTGAGATTAAAGGCAGAACCACTGTGCCTGGC
AGTTGTGTGTTTTAAGGTTGTCCTTGCAAACCACTGATGGCTGTGAAATT
AAGGCAGAAAGGCAAAACTAACATTTTCTGCTTTGAATCACACATTTTGG
TATATTTTGTGCTGCGTTTGAGTATTAATAATTCATGTTTGCTACTTAAC
TATTTTCTATTTATGCTTATACTTAACAACATATGTATTAAAAGTGAGTG
TTATCTCATGAAAACTTTGTTTTGCACCCACACTACAATATGCATGTGCA
TGTGTTTTTGTACAACAGTGCACCAGGCAGGCAGAAAGGACTTCCAGGTA
AAGCCAAGTGGGGAAGTGGGTGCCCTGTAGTCTGTAACCCCAGACTGGTG
GCGCTGGTCCATTGCAGATCTCTGGAGCTCAGTGTCCAGCCACTATCAAT
GTAGCTGAATTGGTGTATTCCAGGTTAAGTAAGAAGACGAGTGGAGAGAA
ATTGAAGACGACATTCACTGTTGACCTTCTGTCCTCTACATGCACACACC
ACAAGATAACGCACTATAACCTAGTCCTGTTATAGATCAGAACTATAAGG
TAGCTTTCTTTAACCAGATGAGCN
CAGGGGTTCCCCTTTNNNNCCCCCCNNNNNNNNNNNNCNCCCCNCCCCCN
NNNNNNNNNNNNNNNNNNNNCCTCTAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TTACCCCCTNGACTATANGCATANANCANGAATTAANTAATAAAGGGTAT
TACTCACTTCAAGCAAAANTACTCACTGAACCTTTTCCTGAANACNATAN
CAATGTAAACAGGCACCTAACGCTACACCAAATTTAAATACACCCAACAA
NCTGNCACAACACCTTGANTGAAGCAGNNNNACTTCAAAACCCAATACAA
ATTCCAGGCACATGATGCCTACCCCCCTNCCTTCNCTTTTCTGTCCCCCC
ACAAAAAATCTTTTCTTTTCCTTGAACCCCTACAAAACCCNCCTTACCCA
AAAAATTTTTTTTTTAATCCCTAAANACANTTCCCCCNATTTNNNTTTTT
NTTTTTNNCCCCCCCTCCTCCTTCTCCCCCCCCCCCCCCAAAAATTCCCA
CCCTNCAAAACAAAACCCTCCCGCGGGGGGGGGGGTTTTTTTTTTCTCTT
TCTTTTTGGGGGGGGGGGGGGATTGTTGCCTGNTAATTANNCCTTGGTGG
GGGGGTGGGTNTCCTTCGTTTCCCCCACCCCCCCTCTCTTTTTTTTCTCT
GANACCTCCTCCCCCCTCCTCTCTTATTGGGTGGTTGTTGCTNCCCCNCC
CTTTTATCCCCTTAATATCCCCCCATTGGGGGGCATAAGTATATCCTTGG
NCNCCCTCGCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_k04.b1 MSMg01no214_k04.b1 CHROMAT_FILE:
MSMg01no214_k04.b1 PHD_FILE: MSMg01no214_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:01 2005
         (322 letters)



>mm_chr6_67095379_67096100
          Length = 722

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatatatagtgaatagcttgctgtgaactcctggagatctgtctgtctctt 63
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 ggaattcactatatacagtgaatagctggctgtgaactcctggagatctgtctgtctctt 566

                                                                       
Query: 64  cctcccaagtgctgagattaaaggcagaaccactgtgcctggcagttgtgtgttttaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctcccaagtgctgagattaaaggcagaaccactgtgcctggcagttgtgtgttttaagg 506

                                                                       
Query: 124 ttgtccttgcaaaccactgatggctgtgaaattaaggcagaaaggcaaaactaacatttt 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgtccttgcaagccactgatggctgtgaaattaaggcagaaaggcaaaactaacatttt 446

                                                                       
Query: 184 ctgctttgaatcacacattttggtatattttgtgctgcgtttgagtattaataattcatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgctttgaatcacacattttggtatattttgtgctgcgtttgagtattaataattcatg 386

                                                                       
Query: 244 tttgctacttaactattttctatttatgcttatacttaacaacatatgtattaaaagtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgctacttaactattttctatttatgcttatacttaacaacatatgtattaaaagtga 326

                              
Query: 304 gtgttatctcatgaaaact 322
           |||||||||||||||||||
Sbjct: 325 gtgttatctcatgaaaact 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)