BAC Information

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BAC

Clone NameMSMg01-214L04
Chromosome6 (Build37)
Map Location 55,191,514 - 55,191,795
singlet/doubletsinglet
Overlap geneC330043M08Rik
Upstream geneChn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt
Downstream geneAqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214L04.T7 (MSMg01no214_l04.b1)MSMg01-214L04.TJ (MSMg01no214_l04.g1)
ACCAG395238
length737735
length of high quality
(start - end)
---286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no214_l04.b1 PHD_FILE: MSMg01no214_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:06 2005CHROMAT_FILE: MSMg01no214_l04.g1 PHD_FILE: MSMg01no214_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AAACCACGACAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTGAGTAAGCCAGCCCCGACTTA
GAACCAGCTCACTCTGGGCTAAAATTAGATGTGTCCCCGAGCCAGCTAAG
CTGCCTCCTGTGCCTCTCCTGGCAGCCAATTTCACTAGAAATGAGGTGTG
ACTACCCCTGAGTCCAAACTGGGGATCCCTTCCCTCTCTGCCCCCCCTGT
GTCTAAGGCAGGTCCCCACTTACTGAACACAGGCAGCTTGCATGTGGGAA
GCCTGGCAGATCGGGGACTTACTGAGAAACTGAGACATGGCAGAGAAACG
AGCTCTTTATTTTTGTTCCCCCCCCCCGCCGGTTCAGAACTAAAACTCTC
TCTGGGTCCCAAAGCTGCACAGCACACAACTGCCTCAAGAAGTCAGTACA
TGGGGATTTCAGATTTTCACATTTCCTGTCTGGATCCCTTAGTGGAAACA
GACTTCATGGGAGTTTGCAAGGAAGCGTGGGTGGGTGTATGGGGTGGGGG
TGCCCCTCCTTCACCTCCCTTTTTTCCTTCCCCCACAAAATTTCCTTTCT
CTTTTATTTCCTAAGCATTAACGCTAGTATAATTCTAATACACTTTCGTT
TTTCTTTCTCAGTCCTTTTTCGCCCCGCCTCTCATCTTTCTCCCCACCTA
TCCTTTTCCCCCCCTTCACTCTTTCGTTTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_l04.g1 MSMg01no214_l04.g1 CHROMAT_FILE:
MSMg01no214_l04.g1 PHD_FILE: MSMg01no214_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:06 2005
         (286 letters)



>mm_chr6_55191314_55191999
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgagtaagccagccccgacttagaaccagctcactctgggctaaaattagatgtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcctgagtaagccagccccgacttagaaccagctcactctgggctaaaattagatgtgtc 423

                                                                       
Query: 61  cccgagccagctaagctgcctcctgtgcctctcctggcagccaatttcactagaaatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cccgagccagctaagctgcctcctgtgcctctcctggcagccaatttcactagaaatgag 363

                                                                       
Query: 121 gtgtgactacccctgagtccaaactggggatcccttccctctctgccccccctgtgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtgtgactacccctgagtccaaactggggatcccttccctctctgccccccctgtgtcta 303

                                                                       
Query: 181 aggcaggtccccacttactgaacacaggcagcttgcatgtgggaagcctggcagatcggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aggcaggtccccacttactgaacacaggcagcttgcatgtgggaagcctggcagatcggg 243

                                                     
Query: 241 gacttactgagaaactgagacatggcagagaaacgagctctt 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gacttactgagaaactgagacatggcagagaaacgagctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)