Query= MSMg01no214_l05.b1 MSMg01no214_l05.b1 CHROMAT_FILE:
MSMg01no214_l05.b1 PHD_FILE: MSMg01no214_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:06 2005
(651 letters)
>mm_chr6_55096649_55097700
Length = 1052
Score = 973 bits (503), Expect = 0.0
Identities = 593/647 (91%), Gaps = 43/647 (6%)
Strand = Plus / Plus
Query: 5 gaattctgtctgctttttt-agctcaacct-aagtgggtgacatcagttctctgggttac 62
||||||||| || |||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct: 205 gaattctgtgtg-ttttttaagctcaacctaaagtgggtgacatcagttctctgggtcac 263
Query: 63 agtctccacccacccacccctaacccccatgtagagtggagctagtagtattgtctatca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtctccacccacccacccctaacccccatgtagagtggagctagtagtattgtctatca 323
Query: 123 caaaacagtgatcaagtccaaataaacctgtttattaagtcaatatgcaaaatcagtata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaaacagtgatcaagtccaaataaacctgtttattaagtcaatatgcaaaatcagtata 383
Query: 183 cctgacctagtttagcaacatgtgttgtggtgtagctagtttcttctgtgactgtgaagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgacctagtttagcaacatgtgttgtggtgtagctagtttcttctgtgactgtgaagc 443
Query: 243 tggccagcgactgcagttcctgcttctgcccactgtcccaagtccgtgtcatactgttca 302
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 tggccagcgactgcagttcctgcttctgcccactgtcccaagtctgtgtcatactgttca 503
Query: 303 atagccaggctgtgaaagagcctcccgcacaagtcaaagcaagatgtctaattacatgtg 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 atagccaggctgtgaaagagcctcccgcaaaagtcaaagcaagatgtctaattacatgtg 563
Query: 363 tagttttcttttgtatcaccatgaagccttagagtgagcagagacatccgcagttgggta 422
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagttttcttttgtattaccatgaagccttagagtgagcagagacatccgcagttgggta 623
Query: 423 ggggctttagttgagcagagacatccgcagttgggtaggggctttagttggcattaagaa 482
||||||||||||| ||||||||||
Sbjct: 624 ggggctttagttg-------------------------------------gcattaagaa 646
Query: 483 tgtcatgtggtagctgggcatggtggcccacgcctttaatcccagcactc-ggaaggcag 541
|||||||||||||||||||||||||||||| |||||| |||||||||| | ||| |||||
Sbjct: 647 tgtcatgtggtagctgggcatggtggcccatgcctttgatcccagcacacagga-ggcag 705
Query: 542 agacaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcgaggccagc 601
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 706 aggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcgaggctagc 765
Query: 602 cagggctatacagagaaaccctgtctcaaaaaaaaaaaaccaaaaaa 648
|||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 766 cagggctatacagagaaaccctgtctcaaaaaaacaaaac-aaaaaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space: 667922
Effective search space used: 667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_l05.g1 MSMg01no214_l05.g1 CHROMAT_FILE:
MSMg01no214_l05.g1 PHD_FILE: MSMg01no214_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:06 2005
(245 letters)
>mm_chr6_55191301_55191945
Length = 645
Score = 466 bits (241), Expect = e-136
Identities = 244/245 (99%)
Strand = Plus / Minus
Query: 1 tagatgtgtccccgagccagctaagctgcctcctgtgcctctcctggcagccaatttcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagatgtgtccccgagccagctaagctgcctcctgtgcctctcctggcagccaatttcac 386
Query: 61 tagaaatgaggtgtgactacccctgagtccaaactggggatcccttccctctctgccccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaatgaggtgtgactacccctgagtccaaactggggatcccttccctctctgccccc 326
Query: 121 cctgtgtctaaggcaggtccccacttactgaacacaggcagcttgcatgtgggaagcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgtgtctaaggcaggtccccacttactgaacacaggcagcttgcatgtgggaagcctg 266
Query: 181 gcagatcggggacttactgagaaactgagacatggcagagaaacgagctcttctaggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 gcagatcggggacttactgagaaactgagacatggcagagaaacgagctcttcaaggttg 206
Query: 241 gtctg 245
|||||
Sbjct: 205 gtctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
