CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGAGAATTTACCAATCTTTCTCTTCAATGAAAGCAAAGATAATA
CAATGGGGCTCAATATTAATATAAGACACATTTAATTAGGAAGGAAATTG
CAAAAAAGAGAATATTCCAAGTGGGATAGAGAAGTGGGAGAGGCAAGGTG
ATGAATGTGTTGGGGGTTTAAATAATGATCTATGAATGGCTTTTACTTTC
TAAATCTTTCAAGTAATGGATAGAGTACATGATGCGCCTCCCTTGTCCCT
CATTTATACTGTCATGTCAGATACATTTTAAGGCAATCTGCAATAGTAAG
CACAAGATACTAGGTTTCTCTCTTTCAAAAAAAAAAGCACAATGAAATTG
ATGAGAAGATTATCTAAGAACCTTACACAAATTGTCAGAAAGGCATAGGG
GAGAGTAAAACCTCCTTATTAACTATGAAATAATTCAAAAGAATTATATG
CTATGTTCCATCAAATCTACCAGGAGAGTGATAACTTTCAGTTGCTATCA
TCTAGTGAGCATGCCACCAAATAACAGACAACCATTGTACCCAGGGCTTC
TCTTCCCAATTGTGTCAGATCCTATGCTCTGCTTGTGAAATGTCACCCTG
TGTCCCTATTTCCAAAGATGTAGAAGGGAGTAGTAGACAGAAAAAGGGAG
AGTGAAAGGGTGATAGCTTGCAAATACTTCTN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTGAGGAATACCGAATGGCA
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTTACACAATATGTACTCACTGATAA
ATGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACTCAAGAAGAATGAA

Query= MSMg01no214_o21.b1 MSMg01no214_o21.b1 CHROMAT_FILE:
MSMg01no214_o21.b1 PHD_FILE: MSMg01no214_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:25 2005
         (602 letters)



>mm_chr6_14559575_14560579
          Length = 1005

 Score = 1054 bits (545), Expect = 0.0
 Identities = 589/605 (97%), Gaps = 5/605 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaattaggaaggaaattgcaaaaaagagaatattccaagtgggatagagaagtgggag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 804 tttaattaggaaggaaattgcaaaaaagagagtattccaagtgggatagagaagtgggag 745

                                                                       
Query: 61  aggcaaggtgatgaatgtgttgggggtttaaataatgatctatgaatggcttttactttc 120
           ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 744 agggaaggcgatgaatgtgatgggggtttaaataatgatctatgaatggcttttattttc 685

                                                                       
Query: 121 taaatctttcaagtaatggatagagtacatgatgcgcctcccttgtccctcatttatact 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 684 taaatctttcaagtaatggatagagtacatgatgtgcctcccttgtccctcatttatact 625

                                                                       
Query: 181 gtcatgtcagatacattttaaggcaatctgcaatagtaagcacaagatactaggtttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcatgtcagatacattttaaggcaatctgcaatagtaagcacaagatactaggtttctc 565

                                                                       
Query: 241 tctttc---aaaaaaaaaagcacaatgaaattgatgagaagattatctaagaaccttaca 297
           ||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 tctttcaaaaaaaaaaaaagcacaatcaaattgatgagaagattatctaagaaccttaca 505

                                                                       
Query: 298 caaattgtcagaaaggcataggggagagtaaaacctccttatta-actatgaaataattc 356
           |||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||
Sbjct: 504 caaattgtcagaaaggcataggggagagtaaaacttcttta-tatactatgaaataattc 446

                                                                       
Query: 357 aaaagaattatatgctatgttccatcaaatctaccaggagagtgataactttcagttgct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaagaattatatgctatgttccatcaaatctaccaggagagtgataactttcagttgct 386

                                                                       
Query: 417 atcatctagtgagcatgccaccaaataacagacaaccattgtacccagggcttctcttcc 476
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 atcatctagtgagcatgccaccaaataacagacaaccattgtacccggggcttctcttcc 326

                                                                       
Query: 477 caattgtgtcagatcctatgctctgcttgtgaaatgtcaccctgtgtccctatttccaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caattgtgtcagatcctatgctctgcttgtgaaatgtcaccctgtgtccctatttccaaa 266

                                                                       
Query: 537 gatgtagaagggagtagtagacagaaaaagggagagtgaaagggtgatagcttgcaaata 596
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgtagaagggagtagtagacagaaaaagggagagtgaaagggtgatagcttgcaaata 206

                
Query: 597 cttct 601
           |||||
Sbjct: 205 cttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1005
Length adjustment: 10
Effective length of query: 592
Effective length of database: 995
Effective search space:   589040
Effective search space used:   589040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)