Query= MSMg01no215_h24.b1 MSMg01no215_h24.b1 CHROMAT_FILE:
MSMg01no215_h24.b1 PHD_FILE: MSMg01no215_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:11 2005
(673 letters)
>mm_chr6_129271556_129272628
Length = 1073
Score = 1234 bits (638), Expect = 0.0
Identities = 662/670 (98%)
Strand = Plus / Plus
Query: 4 ggaattcctgactaagaatgaatggaggagacaagaatccccagaggaaactgctctagt 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgactgagaatgaatggaggagacaagaatccccagaggaaactgctctagt 263
Query: 64 agagtctcccaccttgacctcaaccagcttctgtgtttcccaggtttgtttctatttcaa 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agagtttcccaccttgacctcaaccagcttctgtgtttcccaggtttgtttctatttcaa 323
Query: 124 cttccacaatacaaacccagggcatcacaactctttaagccactaagttgtctaaatgct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttccacaatacaaacccagggcatcacaactctttaagccactaagttgtctaaatgct 383
Query: 184 gcgagatccttccctccctttgaagaagaacagtagcaagttatcttggaatacctagag 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 gcgagatccttccctccctttgaagatgaacagtagcaagttatcttggaatacctagag 443
Query: 244 caacataggttttagggtctcctggttttaagtcacatgtagcctattattttttcttct 303
||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct: 444 caacataggttttagggtctcctggttttaagtcacatggagtctattacgttttcttct 503
Query: 304 tccttcagaactcttcatctcctctccccatagcccactttcttgtttacagcctgtacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccttcagaactcttcatctcctctccccatagcccactttcttgtttacagcctgtacc 563
Query: 364 cctccatgcttgcacacacatataaaatgtaaatgctaagatcacataagacaaaagacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctccatgcttgcacacacatataaaatgtaaatgctaagatcacataagacaaaagacc 623
Query: 424 tgtggtagttgaagagatttttattttaatgatgaccagcgttaatgtctatacctccct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtggtagttgaagagatttttattttaatgatgaccagcgttaatgtctatacctccct 683
Query: 484 ttcttcaagatcattttggtgttatccagaatctaagtgaaacagcttttggaatttagg 543
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 684 ttcttcaagatcattttggtgttatccagaatctgagtgaaacagcttttggaatttagg 743
Query: 544 ctaacctccatggattcttcaaggtcacaaagcttcttttcttcatgttcctctctactt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctaacctccatggattcttcaaggtcacaaagcttcttttcttcatgttcctctctactt 803
Query: 604 ccgggtgctcacgttctgttcataccgactcatcacgaaatttgtgtcctttactctttc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccgggtgctcacgttctgttcataccgactcatcacgaaatttgtgtcctttactctttc 863
Query: 664 agcaactatg 673
||||||||||
Sbjct: 864 agcaactatg 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_h24.g1 MSMg01no215_h24.g1 CHROMAT_FILE:
MSMg01no215_h24.g1 PHD_FILE: MSMg01no215_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:11 2005
(360 letters)
>mm_chr6_129309301_129310064
Length = 764
Score = 621 bits (321), Expect = 0.0
Identities = 352/365 (96%), Gaps = 6/365 (1%)
Strand = Plus / Minus
Query: 1 attctagaatatcgtgcaatattaagtacttaaaggtatctagtgaatggttttggctcc 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 attccagaatatcgtgcaatattaagtacttaaaggtatctagtgaatggtttttgctcc 505
Query: 61 actcttcttaactgtaagcagtaatt-----aaaaaaaaaaagttcctgtaatttggtta 115
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 actcttcttaaccgtaagcagtaattaaaaaaaaaaaaaaaagttcctgtaatttggtta 445
Query: 116 ctgtaggttgttggagacttgccaaaataatggcagggtttgtgtggcaactctctacat 175
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtaggttgttggagatttgccaaaataatggcagggtttgtgtggcaactctctacat 385
Query: 176 aatcaaatgtaggtgtcccagaagtctgatgtggcagttgcctttaaaaaaagtggtgtc 235
|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 384 aatcaaatgtaggtttcccagaagtctgatggggcagttgccttt-aaaaaagtggtgtc 326
Query: 236 tactgaagctgctgttaatggcaatctaccaagctcctgaagaaattgtctccattcaag 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactgaagctgctgttaatggcaatctaccaagctcctgaagaaattgtctccattcaag 266
Query: 296 actaaccataaaaattcaacaagaccaaagacttactcttcagagaggaacatcttctca 355
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaccataaaaattcaacaagaccaaagacttactcttcagagaggaacatcttctca 206
Query: 356 cttag 360
|||||
Sbjct: 205 cttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 764
Length adjustment: 9
Effective length of query: 351
Effective length of database: 755
Effective search space: 265005
Effective search space used: 265005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
