BAC Information

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BAC

Clone NameMSMg01-216E04
Chromosome6 (Build37)
Map Location 99,291,878 - 99,292,182
singlet/doubletsinglet
Overlap genenone
Upstream geneGm765, LOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216E04.T7 (MSMg01no216_e04.b1)MSMg01-216E04.TJ (MSMg01no216_e04.g1)
ACCAG396204AG396205
length737782
length of high quality
(start - end)
---305 (131 - 435)
definitionCHROMAT_FILE: MSMg01no216_e04.b1 PHD_FILE: MSMg01no216_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:11 2005CHROMAT_FILE: MSMg01no216_e04.g1 PHD_FILE: MSMg01no216_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTATCTTTCTGGCAGCGATCTCCTCCAAAGACTAGACCCTGACAA
GCAGCTGTGTTTAATGGAGCTATGACCAATGGTACTAAGCCGAGGCACGG
TCTCAGGAAAAAATATGCAGAAAGAGTGATCAAGTTAGCGCCTTACTATG
CAAGCCAAAGGCCTTAAGGAATACTTTGGGATGGGAGTGTAGCTCAGAGG
CAAAGCTCCTGTCTAGCATGTGAGTCCCTCATTTGGATTCCTGAACTACC
AAATAAACACACAAACAATATGTCATCAAACTATACAGTACAGGAAAGTG
TTACCTATGAGATATTTCTTTTTCACACCCCCACGTCAATGTCTTTATGC
TGTACTTTTGTTAAACACGTGCGCTCAACGACACCATGTAAGGGAATGTC
TGCCTCTGGGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTG
AGCAAAACCCCACCAAAATACCATGAACCTTAAAAAACACTCCTTTGCTT
TCGTTTTTCCAAAATCTTCCCCCCCTCTTAACACCTTCCCACCTTTCTCC
CCCTCTACTCCCTAGGTCCCGAATCCCTACCCTTGTTACTTAATTTTCCA
CTTTGTTTCCCCCCTTTTTCCTCCCTCTTTTTTTTCCCCTTTTTCGACAC
TTATCCCCTTAACTGAAACACCCGCTGTTCCATTACT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCCAGGTCTTTGACTCTACAT
GGATACATTGGATTTGAAGTATGGCCCCGCTTACGAAGGTGGTTCACTAT
TACTGTTTCAAAGTCTGACTCAAGAGAATCATATTGTTCTTTATTTATTT
TATCCCCCACATATTGTTCTTATAAACAATGAAGCAAACTTGTACCTCCA
AAAACAACAACTTCTTAACACTCTATTCTTTGGGACCTGGTTACTCATGG
AGAAACTTGTGTCACACAATTGGTATTCTTGTTGTTTTTAAATATTTATT
TGTTTTTATTAATTATATGTATGTGGGTAGGAGCTATGCGCACTAGTGTG
CCTGTGTTCTCTGAGGCCAGAACGCTGAGTCTTCGTGGAGCTAGCATTAT
GGGCAGTTGTGAGCTGTACAGTGTGGGTGCTGGGAATGGAATTCAGGTTC
TCTACGAGCACAGTAAGTCATTTCTCTGGCCCCACAGTGATTGCTGTTGA
TACCTGGCGTAGGGTTTCCCCGTTGCTTTTCGGAAACCCCTTGCCTAGCT
AGGAAAAAGAATCACTTTGTAAGCCCCTGATGAACCCTGGGGTCTAAGTT
CTCCTGAAGATTTGGAAATTATTGGTAATGGCCCTGTGAGGGAAATTCCG
AAATTTTCATTAATTCTTGGAACCCTTTCCTTTGGACTTTTCTGCCCATA
AATCCTTTTTGGTCCGAGAACTTGTCCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_e04.g1 MSMg01no216_e04.g1 CHROMAT_FILE:
MSMg01no216_e04.g1 PHD_FILE: MSMg01no216_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:11 2005
         (305 letters)



>mm_chr6_99291779_99292483
          Length = 705

 Score =  538 bits (278), Expect = e-157
 Identities = 299/306 (97%), Gaps = 2/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacgaaggtggttcactattactgtttcaaagtctgactcaagagaatcatattgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttacgaaggtggttcactattactgtttcaaagtctgactcaagagaatcatattgttct 345

                                                                       
Query: 61  ttatttattttatcccccacatattgttcttataaac-aatgaagcaaacttgtacctcc 119
           ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 344 ttatttattttatcccctacatattgttcttataaacaaat-aagcaaacttgtacctcc 286

                                                                       
Query: 120 aaaaacaacaacttcttaacactctattctttgggacctggttactcatggagaaacttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaaacaacaacttcttaacactctattctttgggacctggttactcatggagaaacttg 226

                                                                       
Query: 180 tgtcacacaattggtattcttgttgtttttaaatatttatttgtttttattaattatatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtcacacaattggtattcttgttgtttttaaatatttatttgtttttattaattatatg 166

                                                                       
Query: 240 tatgtgggtaggagctatgcgcactagtgtgcctgtgttctctgaggccagaacgctgag 299
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct: 165 tatgtgggtaagagctatgcacactagtgtgcctgtgttctctgaggccagaatgttgag 106

                 
Query: 300 tcttcg 305
           ||||||
Sbjct: 105 tcttcg 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)