BAC Information

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BAC

Clone NameMSMg01-216I20
Chromosome6 (Build37)
Map Location 19,316,077 - 19,316,723
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216I20.T7 (MSMg01no216_i20.b1)MSMg01-216I20.TJ (MSMg01no216_i20.g1)
ACCAG396385AG396386
length756734
length of high quality
(start - end)		318 (46 - 363)655 (77 - 731)
definitionCHROMAT_FILE: MSMg01no216_i20.b1 PHD_FILE: MSMg01no216_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:36 2005CHROMAT_FILE: MSMg01no216_i20.g1 PHD_FILE: MSMg01no216_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTTGATTATGGTAAGTAATTATTTTGATGTGTTCTTAGATTCA
GTTTGTGAAAATTTTATTGCGTCCTTTTACATCTATATTCATAAGGGACA
TTGGTCTGATGTTCTCTTTCTTTGTTGGGTTTTCGTGTGGACTTGGTATC
AACATAACTGTGGCTTTATAGAACGAGTTGGGGAGTGTTCCTTCTGTTGC
TATTTTGTGGTATATTTTAAAGAATATTTGTATTAGGTCCTCTTTGTAGG
TCTGAGAGAATTCTGCACTATTTCCATCTGGTCCTGGGCTTTTTAATTTA
TTTATTTGTTTTTATTTTTCTCCCCCCCCCCCCCTTATTTATATATTTTT
GGTTGAGAGACTTTTTCCCCCCCCACAAAAAAAAAAAAATTATGTGAGGA
GGGATATGCCTTATCCTGATCCCGATTTACTTTTTTTATCACGCATATTC
GACTTTAATTCCGCACCATTTAATCCATATAATCTCTATCTCTTTTTAAC
TCTCTCTTATCATTGTATATTCAATCTTTATCATTATTCTCTCTTTTACA
CCTTATTCTGTTTTATTTTCTCATCTACCCACATTACTCTTTCCATCTTT
TTAATACCCTAAACTCTATTATTTTTTAACTTTTTACTACTTTCTATATA
TTAGTTTTTATTTTTTCTTGTTTATTTCTATATTATACTCTTCCTTTTTT
ATCTTC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAGGCAACCCTCCACTG
GTTTCTTTGTATATTTTATATTGCCCCCTGAACTGAAATGTTATAAATGT
GAGGAAACCCCACTACTACTCACTTTTAAAGATGGGTAAGACTATATTTC
TGGATGTTGAACAACTAGGACTTAGCAAATTCATGGAGGAGAGAAGAACT
GGAACAATAGCTGACCAGAATAATCTATAATCAGCCAGGCATCTAGAGTC
AATGAGATCGGTTGGAAGATGCCCCTACATTAATGGTAATTTCCTTGTCT
TCATGTCCTCTTGATTACTGTGACCATAGAGACCCTCGCGGTAGGTTGAC
AATCAGTATATATACTACACACCATCCGGAGAAACAGCTAGAATGGCCTG
TCTTCTAGGAATAAGTACATCTGATCTAATAGCATGGTCCTCAGAGGAAA
CATGAAGGAGTCTGTTTTCCTTAACAGCAGGAGCATTATACAGAGAAGCT
TTGGAACTCTCAGGCCTAAGTTGTATCTCTCTATCAATTCCATCCCCTAA
GGATTCATAGAGCCCCACGGAAGAGGAGGCAGAGAGAGCAGGGGAGACAG
AGGCAACAGAGGACTTCAAGAAAAGAATCTATAAACCAATGAGAGCAAAG
TTCATATGAACACACAGCGACTGAAGCAGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_i20.g1 MSMg01no216_i20.g1 CHROMAT_FILE:
MSMg01no216_i20.g1 PHD_FILE: MSMg01no216_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:36 2005
         (655 letters)



>mm_chr6_19316077_19317131
          Length = 1055

 Score = 1189 bits (615), Expect = 0.0
 Identities = 639/647 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcaaaaaggcaaccctccactggtttctttgtatattttatattgccccctgaactga 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 647 catcaaaaaggcaaccctccactggtttctttgtatattttatagtgcccactgaactga 588

                                                                       
Query: 61  aatgttataaatgtgaggaaaccccactactactcacttttaaagatgggtaagactata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aatgttataaatgtgaggaaaccccactactactcacttttaaagatgggtaagactata 528

                                                                       
Query: 121 tttctggatgttgaacaactaggacttagcaaattcatggaggagagaagaactggaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tttctggatgttgaacaactaggacttagcaaattcatggaggagagaagaactggaaca 468

                                                                       
Query: 181 atagctgaccagaataatctataatcagccaggcatctagagtcaatgagatcggttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atagctgaccagaataatctataatcagccaggcatctagagtcaatgagatcggttgga 408

                                                                       
Query: 241 agatgcccctacattaatggtaatttccttgtcttcatgtcctcttgattactgtgacca 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 407 agatgcccatacattaatggtaatttccttgtcttcatgtcctcttgattactgtgacaa 348

                                                                       
Query: 301 tagagaccctcgcggtaggttgacaatcagtatatatactacacaccatccggagaaaca 360
           ||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct: 347 tagagaccctcacggtaggttgacaatcagtatatatactacagagtatccggagaaaca 288

                                                                       
Query: 361 gctagaatggcctgtcttctaggaataagtacatctgatctaatagcatggtcctcagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gctagaatggcctgtcttctaggaataagtacatctgatctaatagcatggtcctcagag 228

                                                                       
Query: 421 gaaacatgaaggagtctgttttccttaacagcaggagcattatacagagaagctttggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaaacatgaaggagtctgttttccttaacagcaggagcattatacagagaagctttggaa 168

                                                                       
Query: 481 ctctcaggcctaagttgtatctctctatcaattccatcccctaaggattcatagagcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctctcaggcctaagttgtatctctctatcaattccatcccctaaggattcatagagcccc 108

                                                                       
Query: 541 acggaagaggaggcagagagagcaggggagacagaggcaacagaggacttcaagaaaaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 acggaagaggaggcagagagagcaggggagacagaggcaacagaggacttcaagaaaaga 48

                                                          
Query: 601 atctataaaccaatgagagcaaagttcatatgaacacacagcgactg 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  atctataaaccaatgagagcaaagttcatatgaacacacagcgactg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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