BAC Information

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BAC

Clone NameMSMg01-216K22
Chromosome6 (Build37)
Map Location 133,531,663 - 133,532,315
singlet/doubletsinglet
Overlap genenone
Upstream genePrp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884
Downstream geneEG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216K22.T7 (MSMg01no216_k22.b1)MSMg01-216K22.TJ (MSMg01no216_k22.g1)
ACCAG396472AG396473
length815729
length of high quality
(start - end)		209 (46 - 254)653 (77 - 729)
definitionCHROMAT_FILE: MSMg01no216_k22.b1 PHD_FILE: MSMg01no216_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:46 2005CHROMAT_FILE: MSMg01no216_k22.g1 PHD_FILE: MSMg01no216_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGTTTAGCTCTGTACCCCATTTTTAATAGGGTTGTTTGGTTTT
CTGGAGTACACTTATTGTAATATATACCTATAATATATATATATATATAT
TATATATATATATATATTATATATATATATTACAATAAGTGTACTCCAGA
AAACCAAACAACCCTATTAAAAATGGGGTACAGAGCGAAACATAGAATTC
CGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATTTTTTTTTTAACCCCCGCACCGCCC
CCGAGAGGAAGAATTTTTTTTTTTCCCAAAACANAACCCCAAAAGGGAAA
GGAGAAAAAGAGGAAGGGGGCCCCCCCCCAAAAAAAAAAAAAAAANNGGC
GGCGGGGGCGCCCCCCCCCACCACCCACAGCCGGCCCGAACAACCCAACC
CCCCCGCGCCCGCCCACCGCCCCCCCCCACCACACCCCCCGAGAACACCC
CCCGCCCCCCACCACCCCCACACCCCCCCGCAACCCCCCAAGCCCACCAC
CGGCGCCCCCCCACACCCCAACCACCAACCCACCCCAACCACCACGCACC
CCACCCCCACCACACGCCACCACCACCCCGCCCCCCACCCACCCCGCGCA
CCCCCCCCACCGCACACGCGCGCCACCCAACCCCAGCCCCCCGACCGCAC
CCGCCCCAAGNGCCACCGCCCCCGCACCCCGCGCCGCCNCCGCCCACATC
ACCTCCCACTCACAG

ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTCCTCTCAAAGAGCAAAAGTT
GATAATAAATAGTGAGCTATCTCTCTAGCTCTGGAATTTTAAAAATGGAT
ATATTATGTGCTTTCTACTTTGTCTAACATGTGTCAAAAATCTACATAAT
TGAAATCCCAGAACCATCTGTTTATGCTAAGAAAGATTCAGAGGACACTG
GACAATGAGTTCCCTTAGTGTGAGAAAGGCAGCAAAAGTGTAGCATATAT
ATAGCTCTCAAAGATTTCATATTATCCCTAAAATATAATATCAAGGACAT
CTGTTCCTCTTAAGAATTGAGGTAGCTAACAAATGGATTCACTTACATAG
TACCAGGAAGAACAAGAGAGAATACAGTGGTAAAGACTAGCCAATGGGTA
GGATCAGGAATGACTCAGTGAATAAGGATCACTTGTCATCTTCATTGTAT
TTTCCATTTACCACTGAGCTACTATAGGTGGTAAGCAGTAGCCCACATCC
CTATGGGTCGATGTCTCATGAACATCCTCCCACTTCTCACATTAGCACCA
CTGGGAATCAGGACTTTCTCAGGACTTAAGGTCTGGCACTACACAAATTT
CATCTTATTGTCTGTTTCCATGGTGCATCATTTCTTTTTGCCATTCAGTG
TTCATATGTTCCAACCAAAAGGAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_k22.g1 MSMg01no216_k22.g1 CHROMAT_FILE:
MSMg01no216_k22.g1 PHD_FILE: MSMg01no216_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:46 2005
         (653 letters)



>mm_chr6_133531463_133532515
          Length = 1053

 Score = 1247 bits (645), Expect = 0.0
 Identities = 651/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtcctctcaaagagcaaaagttgataataaatagtgagctatctctctagctctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tggtcctctcaaagagcaaaagttgataataaatagtgagctatctctctagctctggaa 794

                                                                       
Query: 61  ttttaaaaatggatatattatgtgctttctactttgtctaacatgtgtcaaaaatctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttttaaaaatggatatattatgtgctttctactttgtctaacatgtgtcaaaaatctaca 734

                                                                       
Query: 121 taattgaaatcccagaaccatctgtttatgctaagaaagattcagaggacactggacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 taattgaaatcccagaaccatctgtttatgctaagaaagattcagaggacactggacaat 674

                                                                       
Query: 181 gagttcccttagtgtgagaaaggcagcaaaagtgtagcatatatatagctctcaaagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gagttcccttagtgtgagaaaggcagcaaaagtgtagcatatatatagctctcaaagatt 614

                                                                       
Query: 241 tcatattatccctaaaatataatatcaaggacatctgttcctcttaagaattgaggtagc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 613 tcatattatccctaaaatataatatcaaggacatctgttcctcttaagaattgagggagc 554

                                                                       
Query: 301 taacaaatggattcacttacatagtaccaggaagaacaagagagaatacagtggtaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taacaaatggattcacttacatagtaccaggaagaacaagagagaatacagtggtaaaga 494

                                                                       
Query: 361 ctagccaatgggtaggatcaggaatgactcagtgaataaggatcacttgtcatcttcatt 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 493 ctagccaatgggtaggatcaggaatgactcagtgaatagggatcacttgtcatcttcatt 434

                                                                       
Query: 421 gtattttccatttaccactgagctactataggtggtaagcagtagcccacatccctatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtattttccatttaccactgagctactataggtggtaagcagtagcccacatccctatgg 374

                                                                       
Query: 481 gtcgatgtctcatgaacatcctcccacttctcacattagcaccactgggaatcaggactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtcgatgtctcatgaacatcctcccacttctcacattagcaccactgggaatcaggactt 314

                                                                       
Query: 541 tctcaggacttaaggtctggcactacacaaatttcatcttattgtctgtttccatggtgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tctcaggacttaaggtctggcactacacaaatttcatcttattgtctgtttccatggtgc 254

                                                                
Query: 601 atcatttctttttgccattcagtgttcatatgttccaaccaaaaggaaaaaaa 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atcatttctttttgccattcagtgttcatatgttccaaccaaaaggaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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