BAC Information

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BAC

Clone NameMSMg01-216M06
Chromosome6 (Build37)
Map Location 114,127,982 - 114,128,559
singlet/doubletsinglet
Overlap geneSlc6a11
Upstream geneLhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, LOC666491
Downstream geneSlc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216M06.T7 (MSMg01no216_m06.b1)MSMg01-216M06.TJ (MSMg01no216_m06.g1)
ACCAG396528AG396529
length772742
length of high quality
(start - end)		190 (46 - 235)578 (77 - 654)
definitionCHROMAT_FILE: MSMg01no216_m06.b1 PHD_FILE: MSMg01no216_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:54 2005CHROMAT_FILE: MSMg01no216_m06.g1 PHD_FILE: MSMg01no216_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGTGAAATAAATCCTTTCTTCCCCAACTTCCTTTTGGTCTTGG
TGTGTCATCACAGTAATAGTAGCTCTAACTACGACACATACATACTTATT
TATGTCATATTATAATTATAGGAGAGAGCAACAGTTTAAGAGAGAGAGGG
AGAATGGGATGAGTTGCAGGGGAGAGGGAAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
NNNNNNNNNNTNNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNNT
TTTTTTTTTTTTCTCCCCCCCCCCCCCCCCTTNTTTTTTNTTTTTCACCC
CTTTCTTTTTCCCCCCCCCTCCCACAAAAATATATTCACTCTTTTTTTTC
GCGTTTATCTCTAATTTTTCCCTCCTCCTTATCCTACCCAACTAACACTT
CCCATTTCATATTCCCCCCTCACCTCCTCATCACTCCTCTACTCCTTCTC
ATCAATTCTCCCTCCTATACTTATCTGCTTCTTTAATATCTAATCCTCTC
CCTCGTCATTCCACCCTTTTCATCTCTTTTTCTCCCTCTTGCCCGTTTTC
TATTACCCCTTCTACCCCTCGTTCTCCCTATATTTGTTCCCCGCTTTTCC
CTCCACTTTATTTTTGCCCCTTTTCTGTTCTTTTTCTCCGTGTTTCTTGT
CCTCCCCCGTTATCGCCTTATN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGAAGCTTAAGTGGTACAGAG
GCAAGACAGTAACGTCTGTCTTACCACCTAAAGGATAAGTCAGAGGCACA
TGGGGAGTTTCCTGATATCACAGAGACTAAAGCACTGAGTTAAAATCCAA
GGACTAGGATTTCCAGGAACACTACAGTGCGCACCAAACATGACAAAAAG
CCCTGTTTCCCAAGGTCTCCAAATGGCCTGGCAACCATGCGGGAGTGAGA
AGCTCTAACCACTTAAGCTTAAAGTCTGTTTTGCATGAAACTGGAAGGTT
TTATTTGGAGCTGCTAAGGATTGGATCCAGGGCCTTGCATAGCCAAGTTT
TTTCCCCTTTCTCATATTAATTACAACTGAGGTTTCCACAAATAAAGTCA
TCACTCAAGGTGAGGTAAGGCAGGTTATCTAAACACCATTCCTCCTTCCA
GATAAATCATGTTGCTATGCCAACACCAACATAACCCTCCTGACCAAGGC
ACCATGCCTGGGCAGGCATGTTTACAACCATTGCAATAGTGGGGACTCTA
AATTAATATATCTGCTAACTGGAAGCTCTTATTTCAAGACGGAAAACCCA
GAGCATACCGAGAGCAATGGTCCTGAACAGTCTGGGCTTCCATCTCGCCT
TGTGTCCGTGTGTGCTCCTTCCAGATGGAATCACCTATACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_m06.g1 MSMg01no216_m06.g1 CHROMAT_FILE:
MSMg01no216_m06.g1 PHD_FILE: MSMg01no216_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:54 2005
         (578 letters)



>mm_chr6_114127782_114128759
          Length = 978

 Score = 1040 bits (538), Expect = 0.0
 Identities = 568/578 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggaagcttaagtggtacagaggcaagacagtaacgtctgtcttaccacctaaaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttaggaagcttaagtggtacagaggcaagacagtaacgtctgtcttaccacctaaaggat 719

                                                                       
Query: 61  aagtcagaggcacatggggagtttcctgatatcacagagactaaagcactgagttaaaat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aagtcagaggtacatggggagtttcctgatatcacagagactaaagcactgagttaaaat 659

                                                                       
Query: 121 ccaaggactaggatttccaggaacactacagtgcgcaccaaacatgacaaaaagccctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ccaaggactaggatttccaggaacactacagtgcgcaccaaacatgacaaaaagccctgt 599

                                                                       
Query: 181 ttcccaaggtctccaaatggcctggcaaccatgcgggagtgagaagctctaaccacttaa 240
           ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 598 ttcccaaggtctccagatggcctggcaaccatgcgggagtgagaagttctaaccacttaa 539

                                                                       
Query: 241 gcttaaagtctgttttgcatgaaactggaaggttttatttggagctgctaaggattggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gcttaaagtctgttttgcatgaaactggaaggttttatttggagctgctaaggattggat 479

                                                                       
Query: 301 ccagggccttgcatagccaagttttttcccctttctcatattaattacaactgaggtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 478 ccagggccttgcatagccaagttttttcccctttctcatattaattataactgaggtttc 419

                                                                       
Query: 361 cacaaataaagtcatcactcaaggtgaggtaaggcaggttatctaaacaccattcctcct 420
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 418 cacaaataaagtcatcacccaaggtgaggtgaggcaggttatctaaacaccattcctcct 359

                                                                       
Query: 421 tccagataaatcatgttgctatgccaacaccaacataaccctcctgaccaaggcaccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 358 tccagataaatcatgttgctatgccaacaccaacataaccctcctgaccaaggcaccatt 299

                                                                       
Query: 481 cctgggcaggcatgtttacaaccattgcaatagtggggactctaaattaatatatctgct 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 298 cctgggcaggcatgtttacaaccattgcaatagtgggggctctaaattaatatatctgct 239

                                                 
Query: 541 aactggaagctcttatttcaagacggaaaacccagagc 578
            ||| |||||||||||||||||||||||||||||||||
Sbjct: 238 tacttgaagctcttatttcaagacggaaaacccagagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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