Query= MSMg01no218_f08.b1 MSMg01no218_f08.b1 CHROMAT_FILE:
MSMg01no218_f08.b1 PHD_FILE: MSMg01no218_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:19 2005
(271 letters)
>mm_chr6_74845818_74846488
Length = 671
Score = 505 bits (261), Expect = e-147
Identities = 264/265 (99%)
Strand = Plus / Plus
Query: 5 gaattcccttactgcagtaaatacagaagtgggttggcatatcaagaaaacttccctaac 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcccttactgcagtaaatacagaagtgggttggcataccaagaaaacttccctaac 264
Query: 65 tgttgtactttaatacaataagtatctgcttatatattactgggatcacactactgagat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttgtactttaatacaataagtatctgcttatatattactgggatcacactactgagat 324
Query: 125 gtttaattgtttcatttccagcataagctattacatatttaatgtatttatactgaatac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttaattgtttcatttccagcataagctattacatatttaatgtatttatactgaatac 384
Query: 185 acattcctatttttatattttttgtctttattccatttattgtgcaagtaattagaaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acattcctatttttatattttttgtctttattccatttattgtgcaagtaattagaaaac 444
Query: 245 ctggttctactaggccaatgaaatg 269
|||||||||||||||||||||||||
Sbjct: 445 ctggttctactaggccaatgaaatg 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no218_f08.g1 MSMg01no218_f08.g1 CHROMAT_FILE:
MSMg01no218_f08.g1 PHD_FILE: MSMg01no218_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:19 2005
(285 letters)
>mm_chr6_74936800_74937484
Length = 685
Score = 385 bits (199), Expect = e-111
Identities = 255/281 (90%), Gaps = 16/281 (5%)
Strand = Plus / Minus
Query: 1 actaagtgatcttgatttggaaaatatatagaagaacat----atatatatatatat--a 54
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 593 actaagtgatcttgatttggaaaatatatagaagaacatgaacatatatatatatataca 534
Query: 55 tatgtgtgtgtgtgtgcatttgtgtttttaattaaattatgattattaaaaattataata 114
|| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ta--------tatatgcatttgtgtttttaattaaattatgattattaaaaattataata 482
Query: 115 aatgt-tgaacttgaattgttctccataatataacttactcattgtgaaattttacaaaa 173
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 481 aatgtct-aacttgaattgttctccataatataacttactcattgtgaaattttaaaaaa 423
Query: 174 gctgactgctttatacactattatgcttttactgaatttattaatctgtaaactgtattc 233
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 422 gctgactgctttatacaccattatactttaactgaatttattaatctgtaaactgtattc 363
Query: 234 ctgctttaaaaatatttctataactgggcagtggtggtgca 274
|| ||||||||||||||||||| || ||||||||||||||
Sbjct: 362 cttctttaaaaatatttctatagttgtgcagtggtggtgca 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
