BAC Information

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BAC

Clone NameMSMg01-218J06
Chromosome6 (Build37)
Map Location 64,188,072 - 64,188,356
singlet/doubletsinglet
Overlap geneGrid2
Upstream genenone
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218J06.T7 (MSMg01no218_j06.b1)MSMg01-218J06.TJ (MSMg01no218_j06.g1)
ACCAG397696AG397697
length766730
length of high quality
(start - end)
321 (44 - 364)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no218_j06.b1 PHD_FILE: MSMg01no218_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:38 2005CHROMAT_FILE: MSMg01no218_j06.g1 PHD_FILE: MSMg01no218_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGATCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAAATTGGTCTGATGTTCTCTATCTTTGTTGGATCTT
TCTGTGGTTTATTTTTTATTTTCCCCGNNGCCTTGCCCAAATGATTTGGT
TAGAGTACTTTCTACTTCCACCCCCCCAAAAAAAAAAGAGAATATCTGGT
AGTAGATCGTTCTCTGATACCCCTATATAAATTCTGCATTAATTCCTGTC
TGGTCTTGCCACTTTTTTTTGTTTTACCATACTATTTTTTTTTGCTTTCT
ATTATCTCTTAACCAATACGCCAACCTTTTTATATACCCATCTATTTTTA
GTTTTTATCCACCCTTTTTGCTCTTATTCTCTTCTTTATTTACTCTATTA
TTTTATTAATCCCCGCTCTCTCTCTTCCTTACGACAAATCACTCGCCTCT
TCTTCATTATCCATTCTACTCTTCTTTTTTTTATTTCATCCTTTTCTTTC
CTCTCCTTCTCCATTA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGCCAGATAGTACAGTTAGGTTC
ATAACTGTTGGCAGAAATGTCACCTGCAATTGAAAAACCACCAGTTTCTA
GAAACTACCAGACAGAAGAGGACTACGGAAAAATCACGGAAGGAGAAGCA
AGTACAATGATGTGGTGATGTTATAGATGAAAGAAAATTACTTTATTACC
TTATTTATTTATTTATTAAAAGAAAATTATTTTATTTATTTATAATAAAT
AGATTTATTATCTATTTAATTATTCATTTTTCTTTTTAAAAAAGATTTAT
TCATTTATTTATTTTTTGTATGCCCCCCCCCTACAGCTGTCTTCAGACAC
CAGAAGAGGGAATTGGATGTCCATTACAGATAGATTTTAGCCACAATGTG
GTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTA
GCCACTGAGCCATTGCTCCAGCCCTAATTATTCATTTTTCAAGACAGGGT
CTCTCCAGGTAGCCTTGGCTGTCCTGGAACTTGCTCTGTAGATCAGGCAG
GCTTAGAAATCAGAGAGCTACCTGCCTCTGCCTCCTCAGTGCTGAGACTA
GAGGCATTCACCACTACTGCCTGGCGAANATTACTGTTTTAGAAAGGTGT
TTTAGTATATTCAGATAAAATTCAGTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_j06.g1 MSMg01no218_j06.g1 CHROMAT_FILE:
MSMg01no218_j06.g1 PHD_FILE: MSMg01no218_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:38 2005
         (294 letters)



>mm_chr6_64187872_64188565
          Length = 694

 Score =  493 bits (255), Expect = e-144
 Identities = 279/289 (96%), Gaps = 4/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagccagatagtacagttaggttcataactgttggcagaaatgtcacctgcaattgaaa 60
           |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||
Sbjct: 201 ttagccagatagtacagttaggttcataactgttggcagacatgtcaaatgcaattgaaa 260

                                                                       
Query: 61  aaccaccagtttctagaaactaccagacagaagaggactacggaaaaatcacggaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaccagtttctagaaactaccagacagaagaggactacggaaaaatcacggaaggag 320

                                                                       
Query: 121 aagcaagtacaatgatgtggtgatgttatagatgaaagaaaattactttattaccttatt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||
Sbjct: 321 aagcaagtacaatgatgtggtgatgtaatagatgaaagaaaattactttattac----tt 376

                                                                       
Query: 181 tatttatttattaaaagaaaattattttatttatttataataaatagatttattatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatttatttattaaaagaaaattattttatttatttataataaatagatttattatctat 436

                                                            
Query: 241 ttaattattcatttttctttttaaaaaagatttattcatttatttattt 289
           |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 437 ttaattattcatttttcttttttaaaaagatatattcatttatttattt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)