BAC Information

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BAC

Clone NameMSMg01-231B03
Chromosome6 (Build37)
Map Location 111,905,329 - 111,905,705
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231B03.T7 (MSMg01no231_b03.b1)MSMg01-231B03.TJ (MSMg01no231_b03.g1)
ACCAG398003AG398004
length725728
length of high quality
(start - end)
380 (46 - 425)302 (75 - 376)
definitionCHROMAT_FILE: MSMg01no231_b03.b1 PHD_FILE: MSMg01no231_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:16 2005CHROMAT_FILE: MSMg01no231_b03.g1 PHD_FILE: MSMg01no231_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTAAGTTTCCTGAGGGCTTCCTCTTCTCCATTCAGTTGATGCA
CCCTGTTCCTCATAGGTTTTTTGCCAATATCTCAATTTCCAAAGAGATTT
TTTCCCCTTTCAGACTCCTTACTGATTCAACACAATCAAATTCATTAACA
TGAATTATCAATGCTATTTAACCTTCCCATAAGGTGAGAATTATGCAGGG
ATTTAGATTCTCACTTATTTTCTTTCTTGCTTCAAACTTTGTTTCATTTT
GTGCTCTTTCTCTTCCCTCTCTCTGGTATATGTACATATATATTCTTATG
TGTGTGCATATATGTATATATATGCATGCATATGATGTACATGTATGGAG
ACCAGAAATGGATGAATATATATGCCTGTAAAATTCTTCATTTTCTTTTT
AATTATTTATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTG
TGCATGTGTGTATGTATGCATGCATTGTGCACCTGTGTCCATGTCTATGT
TTGTGTATATATATGTTTATATGTGTGTGCAGATGTCCAGAGTCCATAAG
CGAGTATTATATCCCCAGGACCTACAGTTACTGGTAGTTGTAAGCCACCT
GATGCGAGTATCAGATAATGAATTCTACCCCTCTATTCGAGCAGCTCATG
CTCTTTAATGCTCCACCCCTTCACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAATGGTGG
TAATGAAGTGTTCCCGTAACACCCACTGTTGAGAAGGATTCAACTGCGTG
AATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTA
CAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATC
AGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTT
CTAATGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTA
CAAGGCATGTTTGGTCTTGAACTTTTTCTAGCGTTAGGAGCCTTTTTGTT
CCTTTTCACATGTTATCAACCGCCCAAGGCAGGGCTGAAAATTCTGGATG
AAATTCAGGGCAATCTATCAGAAGTAAAGCGGGTAGAAAGAGTAGGAGCA
AAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCACGGTTCT
TGAACCTGAGGAAAAGTTTACGTCAGGTAAGAATACCTGCCGAGAGATTA
CAAGGAAGGAATAGAAAAAAGACAAGATAAAAGCTCAATTAGTGGAGGTC
TCTAGGAGAAGTAGCCTATACTCATCTCTAGATGAGCTCCAGGAGCCCGT
TCTTAGTAGTTCTGACTCAGATGATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_b03.b1 MSMg01no231_b03.b1 CHROMAT_FILE:
MSMg01no231_b03.b1 PHD_FILE: MSMg01no231_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:16 2005
         (380 letters)



>mm_chr6_111905226_111906005
          Length = 780

 Score =  640 bits (331), Expect = 0.0
 Identities = 366/379 (96%), Gaps = 4/379 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaattaagtttcc--tgagggcttcctcttctccattcagttgatgcaccctgt 61
           ||||||||||||||  | |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggaattcaattaag--tacagtgagggcttcctcttctccattcagttgatgcaccctgt 423

                                                                       
Query: 62  tcctcataggttttttgccaatatctcaatttccaaagagattttttcccctttcagact 121
           ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 422 tcctcataggtttcttgtaaatatctcaatttccaaagagattttttcccctttcagagt 363

                                                                       
Query: 122 ccttactgattcaacacaatcaaattcattaacatgaattatcaatgctatttaaccttc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccttactgattcaacacaatcaaattcattaacatgaattatcaatgctatttaaccttc 303

                                                                       
Query: 182 ccataaggtgagaattatgcagggatttagattctcacttattttctttcttgcttcaaa 241
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcataaggtgagaattatgcagggatttagattctcacttattttctttcttgcttcaaa 243

                                                                       
Query: 242 ctttgtttcattttgtgctctttctcttccctctctctggtatatgtacatatatattct 301
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctttgtttcattttgtgttctttctcttccctctctctggtatatgtacatatatattct 183

                                                                       
Query: 302 tatgtgtgtgcatatatgtatatatatgcatgcatatgatgtacatgtatggagaccaga 361
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 182 tatgtgtgtgcatatatgtacatatatgcatgtatatgatgtacatgtatggagaccaga 123

                              
Query: 362 aatggatgaatatatatgc 380
           |||||||||||||||||||
Sbjct: 122 aatggatgaatatatatgc 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)