BAC Information

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BAC

Clone NameMSMg01-231I05
Chromosome6 (Build37)
Map Location 110,465,364 - 110,465,650
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231I05.T7 (MSMg01no231_i05.b1)MSMg01-231I05.TJ (MSMg01no231_i05.g1)
ACCAG398306AG398307
length715716
length of high quality
(start - end)
320 (45 - 364)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no231_i05.b1 PHD_FILE: MSMg01no231_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:49 2005CHROMAT_FILE: MSMg01no231_i05.g1 PHD_FILE: MSMg01no231_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGCGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGTATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATTAGTTTTATTGCCTCTCCCCCTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTACCCCCACGATATAAGTATGGATCTAAAACCAC
TTTGTTCTGTATATTCCCATAATCACTTAAGGCCATATCATCTCTAGGTT
TCTTCTCATTTCATCGCAGAGCATTTATTTCTAATTCATTTCCTATCCCT
AATGTGATCTATATCCGTTTGCTCACTATTACACCTTTATACAGACTCTA
AGTTTTGACCACTGATTGGTTGACCGGATTGACCGGTGTGTGCCCTATGT
CCATGGCAGACATAATTAACTCCTGAGACTGCTAAGCTCACTCTGTAAAT
GACGATTGGATTCAN
TCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGTCTCTCCTAATTATTGCCT
GTCCAATAACTCTTCACTGTCATACGCCCGTGGAAGTTAACACAAGCTCT
TCCTTTCCTCACTAATGTGTCTTTCCTGTGTATCTGACTTTTCCCCAACT
TCCTTCATATGAAAAGCTTGGCTTTAGATTTGTGTCCTGTATGCTCTGGT
ATTGACTCATTTAATCATGATTTAACATGATGGCTGCTCAAATCTATTTG
CAAATAAACTCACCTTCAAAAGCATGTAAGATTGGGCTTAAAGGGACTTC
AATGAGTGCAAAACCTAATCCACTATCCATCCCCACCATGTTTAATGCTT
TCTGCCCCTATTTCTTTGTCCACCCCGAAAGAGTAAACTGTGATTTTCTG
TGTGAACTCAGAGTGTTGCCACAATTCTTTCCATTTTGAATAACTTTTTC
CTAGATTTATCATATCAATCCAGCAATACTTAGCTTTTAACTTGTAATAT
GATCTGTAATACTTTTATTTCTGAAAAGTATAGGTGTCTTATATCACAGC
AGTTTCATATTTCATGGTTCCTGTTACTTGTCGATGACCTCATCCTCGAA
ATACTGTGATAAATATTATAACCGAATAATTCCCAATGCTTAAATTTCCT
ATTGTACTGACCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_i05.g1 MSMg01no231_i05.g1 CHROMAT_FILE:
MSMg01no231_i05.g1 PHD_FILE: MSMg01no231_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:49 2005
         (287 letters)



>mm_chr6_110465164_110465850
          Length = 687

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctgtctctcctaattattgcctgtccaataactcttcactgtcatacgcccgtggaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 487 tccctgtctctcctaattattgcctgtccaataactcttcactgtcttaggcccgtggaa 428

                                                                       
Query: 61  gttaacacaagctcttcctttcctcactaatgtgtctttcctgtgtatctgacttttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gttaacacaagctcttcctttcctcactaatgtgtctttcctgtgtatctgacttttccc 368

                                                                       
Query: 121 caacttccttcatatgaaaagcttggctttagatttgtgtcctgtatgctctggtattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caacttccttcatatgaaaagcttggctttagatttgtgtcctgtatgctctggtattga 308

                                                                       
Query: 181 ctcatttaatcatgatttaacatgatggctgctcaaatctatttgcaaataaactcacct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 307 ctcatttaatcatgatttaacatgatggctgctcaaatctatttgcaaataagctcacct 248

                                                           
Query: 241 tcaaaagca-tgtaagattgggcttaaagggacttcaatgagtgcaaa 287
           ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 247 tcaaaagcaatg-aagattgggcttaaagggacttcaatgagtgcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)