BAC Information

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BAC

Clone NameMSMg01-232F12
Chromosome6 (Build37)
Map Location 132,178,364 - 132,178,565
singlet/doubletsinglet
Overlap geneLOC631126
Upstream geneKlra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1
Downstream geneLOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232F12.T7 (MSMg01no232_f12.b1)MSMg01-232F12.TJ (MSMg01no232_f12.g1)
ACCAG398882AG398883
length729731
length of high quality
(start - end)
202 (156 - 357)345 (73 - 417)
definitionCHROMAT_FILE: MSMg01no232_f12.b1 PHD_FILE: MSMg01no232_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:48 2005CHROMAT_FILE: MSMg01no232_f12.g1 PHD_FILE: MSMg01no232_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTGATATTGGACCTTTGAGGAACTTTTGGACATTGAGGCAGGGGTG
TATTGATATGCTTAGGGGATACTTTGGGGATXXXXXXXXXXXXXXXXXXX
XXXXXAGTTCTATGCCTGAAATGGTGCTATAATTTAAATTACCATGAAAA
ACGCCTTTAATCATGCCAGCCAGGGGTAAGCTGAAGATACCTCTGATGAT
GCCATAGTGGAAGGGCTAGTGAGGGAGGGACCTTGAAGAGTGGTGTTATA
GAACAGTTTGTAGCCAGACAGCTGGAGGAATGGAGCATAGCAGCCCTCAT
TCTCATCTTTAGAATCCCCCTCCTAATTCAGAAAAAGTGGGATAAACACA
GAAAGGGAAAAGCCGATATTAACCTGATCCTGGCAGTGCCGGTTATGGGC
AGCCACCACCACCTCTAGGGAAAAATTATTCTTATTTCAAGTTTTTATAT
TTATGTTTATTCTTCATTTAACTTACAAAACACAATTATAGTTGAGTATT
AAAATAAAAACAATAGTCAAGTAGTAAGCATGTTATGATTAGAGTCCTTC
CCCAATAGCCTGTTGCATACACAATGTAAAAGAGTGACTGGTCCATAAAA
GGTCTGATACAGAATATGATCTCTGACATGATGTTCATCATCCTCATACT
CTTCTCCATTATAATGATGCTGCCTTTCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTTCTCTCCCCCTAGCATTTTTCTTT
CTCCTCTTAATATCTAACATATGATTCTCTTCCCAAATATATATGCAAAA
AATCAGAGACAGTCATGAAAATAAATATAAGGACCTGAAAATTCCATGTA
CCTATAATTTCTTCCCATAAAAACAAATGAGCCCAGATAAAATCTTTATC
ATTTTCAATTGTACAGAGAAGAAATTTTAAATTCAAAAATGTAATCTATT
CAGAATACATGCATGAAAAATTGTGTAAAATTCAACAGTCTTGTTTTTGT
ATAATTGTTACATTATCTATACACGAGACCCATTGTTCAGTTTCTTTATT
GCAGTAATCTTTATATGTCAGAATGGACCCTTGTGTGCAGAGCAGAGAAC
CTAACAGAAGTGCATCCTTGACAAGAATTCTTGTTTTGAGTCAGATGTCC
TAAAGTGCTTCTCAGCCATTTGAGATTCCTGTGGCAAGTTCTCTGCCTAG
TTCTATACCTAATATTTTTGTGGCCTCATTTTTTGTTTGCTTGCTTGCTT
GATTTTTTTTAACGAAGAGAGGTTAGCTCCTTGAGCTATTTACATATTTT
AGATATTAACACTCTATAGGACATGGGACTAGCGGAGCCATTTTATGTTC
AATCTGTAAGCTGCAGATTTATCCTGTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_f12.b1 MSMg01no232_f12.b1 CHROMAT_FILE:
MSMg01no232_f12.b1 PHD_FILE: MSMg01no232_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:48 2005
         (202 letters)



>mm_chr6_132178164_132178765
          Length = 602

 Score =  352 bits (182), Expect = e-102
 Identities = 197/202 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttctatgcctgaaatggtgctataatttaaattaccatgaaaaacgcctttaatcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agttctatgcctgaaatggtgctataatttaaattaccatgaaaaacacctttaatcatg 260

                                                                       
Query: 61  ccagccaggggtaagctgaagatacctctgatgatgccatagtggaagggctagtgaggg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 261 ccagccaggggtaagctgaagatacctctgatgatgccatagtggaagagctagtgaagg 320

                                                                       
Query: 121 agggaccttgaagagtggtgttatagaacagtttgtagccagacagctggaggaatggag 180
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agggatcttgaagagtggtgttatagaacagtttgtagcctgacagctggaggaatggag 380

                                 
Query: 181 catagcagccctcattctcatc 202
           ||||||||||||||||||||||
Sbjct: 381 catagcagccctcattctcatc 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)