BAC Information

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BAC

Clone NameMSMg01-232G09
Chromosome6 (Build37)
Map Location 132,178,804 - 132,178,933
singlet/doubletsinglet
Overlap geneLOC631126
Upstream geneKlra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1
Downstream geneLOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G09.T7 (MSMg01no232_g09.b1)MSMg01-232G09.TJ (MSMg01no232_g09.g1)
ACCAG398921AG398922
length734737
length of high quality
(start - end)
130 (605 - 734)---
definitionCHROMAT_FILE: MSMg01no232_g09.b1 PHD_FILE: MSMg01no232_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:53 2005CHROMAT_FILE: MSMg01no232_g09.g1 PHD_FILE: MSMg01no232_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTGACATTGAAACTTTGAGGAGCTTTTGAACATTGACTGCTCTT
CGGAATGACATGATTATGCCCAACATTGACCGATTGGTGAATCACAACCA
TCATCGTAGAAATTCCATGACTGATCTGTCGATATAACTGAAATTACCAT
GCAGAGCACCTTTATACATGACAGCCAGCGGTCATATCTGAAGATACCTC
TGATGATGCATGATAGAAAAGGCTAACGACGGAGGGATCTTCGTACCAGC
GCTGACATATAACATTTCGTTATCTGACAGCTGGAGGAATGCAGCATAGC
AGTCGCTCATTCTTCTCACTAAAATCAACCTTTTAAGTCTAAAAAAGTGG
GATAACACGATTACGGACACAGGAGATATCACCCTGGACCTGGTTTGGCC
GGGTATGGCCTATCTCCACCAACTCTAAGGAAAAATGACTCCTATTTCAC
GTCTTTACCTTTATGTATAATCTTCATTTAACTTACGCATGCCGGGTATA
GTTGAGAACTAGAGTAGAAGCATAGCTCCGCATGAAGCATGTTATGATGA
GAGTCCTTCCCCAATAGCCTGTTGCATACACAATGTAAAAGAGTGACTGG
TCCATAAAAGGTCTGATACAGAATATGATCTCTGACATGATGTTCATCAT
CCTCATACTCTTCTCCATTATAATGATGCTGTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCTCTCCCCCTAACATTTAT
CTTTCTCCTCTTGATATCTAGCATATGATTCTCTTCCCAAATATATATGC
AAGAAATCAGAAACGGTCGTGAAAATAAATATAAAGACATGAGGATTCCA
TGTACCTATAATTTCTTCCCATATAAAGACATGAGCCCATATAAAATCTT
TATCATTTTCAAATGTATCTAAAAGATCTTTTACATGCAGACATGCTCTC
TATTACCAACACCTGTGTGAAAAATTGAGTAACACTGCTCACTCTCTGCT
ATTGTATAATTGTTATGTTATCTATAGAAAGACTAATTGATCACCTTCTT
TATTGGAATAATCATTACATATCAAAAGGGACCCTTGTGTGCCTATTAAA
AAACCTGATATAAACGTCTCCTTGAGAGGAATTCTTGGATTGAGTCAAAC
GGCATAAAGAGCTTCTCATACGTTTGAGATTCCTGCGTTTCGTTCACTGC
CTACTTATATAGCTACTATTTTATGTGGTTGCACTTTATGGATGTTTGCT
TGCGTTGAATCTTTTCTAGTGAAGAGAGGATAGCTCCTTGAGTTATTTAC
GTATGTCATGTATTACCACTCGATAGGACATGTAACCATAGGAGCCATTT
TAAGTTTTAGCTGTAGGCTGCTGATTTATCCTGTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g09.b1 MSMg01no232_g09.b1 CHROMAT_FILE:
MSMg01no232_g09.b1 PHD_FILE: MSMg01no232_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:53 2005
         (130 letters)



>mm_chr6_132178604_132179133
          Length = 530

 Score =  228 bits (118), Expect = 8e-65
 Identities = 127/130 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttccccaatagcctgttgcatacacaatgtaaaagagtgactggtccataaaaggtct 60
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct: 201 ccttccccaatagcctgttgcatactcaatgtcaaagagtgactggtccataagaggtct 260

                                                                       
Query: 61  gatacagaatatgatctctgacatgatgttcatcatcctcatactcttctccattataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatacagaatatgatctctgacatgatgttcatcatcctcatactcttctccattataat 320

                     
Query: 121 gatgctgtct 130
           ||||||||||
Sbjct: 321 gatgctgtct 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)