BAC Information

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BAC

Clone NameMSMg01-232G14
Chromosome6 (Build37)
Map Location 37,016,495 - 37,016,800
singlet/doubletsinglet
Overlap geneDgki
Upstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, EG665024
Downstream geneCreb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G14.T7 (MSMg01no232_g14.b1)MSMg01-232G14.TJ (MSMg01no232_g14.g1)
ACCAG398931AG398932
length736799
length of high quality
(start - end)
311 (44 - 354)142 (73 - 214)
definitionCHROMAT_FILE: MSMg01no232_g14.b1 PHD_FILE: MSMg01no232_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005CHROMAT_FILE: MSMg01no232_g14.g1 PHD_FILE: MSMg01no232_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAAATGATAGGGTATGGCTATGTTGAGGTTATTATGTATAGAACTA
GGCACCAGCCCCGCTTGGCCCTGGTTGCTATAGTTTGCCAACTGGGTTGG
AGTGAAATGAAAAGCAGGCATGGAGGCGAGAAACTAATAAAGCCCAGCAT
CTGTTTCGGATAAAGGGGCCAAGCAGGTACTTTTCAGAGTAGATAAGATG
GGAAATAAAAAGAAAAAGAAGAGTAAATGGGACAGAGGTGTGGGATCTTG
ACGAATACGCATGGTCACATATAAGGGAATGGATGTGATTTAGTGGGCAC
ATGTATATTTTCTCCCCACCCCCCCCCAACAAAATCTAAACCGAAAGAAC
AAAGTAAGAGGCCCCCCTGCTTCACAGTCCCATGACAAAGCCACCACAGC
ACGACGGGGAACCCAGACGCCTGAACCCTGTGTTGCAGAGCTCACTGGCG
GCTCCCCGTGTTGTGCTATGGAATGACAATTAATCCTCAGCAGTCTAGTG
GATAGGGAGGACCGTGGGTGCTCTAGAGAAAAGGAGCATTATATTCCAGT
CCCAGGGCAAGAATCAGGTAGGGCTCCTAGTCTCTTATCCTGCACTTCCA
GATGCACTAAAGAACGACCCAGTTGCTCTTTTTTCCCTACTTCAATTTCC
ATTTGTTCTATACCTTCACCCCCTTTCCTCTTCAAG
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATATGTGCATATGTTTTAACTAAATCC
ATCTTCCAGTCTCTCTCCTCCAGCTCCTCCCGTATTCTCTGCCCCCTTTC
TCTTCCAACTTCATATATTCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCGTCCCTCACTTCCCCCCCTTCCCCGCTTCCGACCGACTTTTCCC
TTGCCTCTCGGCCTGGTCGACTCACTCCCTAGCTGACGCTCTCACTTACC
CTACCAGCGACACTTTTTTTTTTTGTGAACCCCTTGCGCTTTCCTCGCAC
GGGATTTTTTTTTTTTCCCCCCCCCCCCCCCCCATTGATAATGTTTGTAG
TGGGTTGGTGGTGGGGGCCCCCCCCCAAAAAAAAAAAAAANTNGTGGGGG
GGGGGGGGGTGTTTTCAATAATTAGCGGATCCCTCCCTGTTCTCGCGCGT
CTAGCGCCCGTTCGTCGTTCTGTAGCGAAGCAACACAGCTCGCCCCGGCA
CTTGTTCACTTGCCCCGATCTCTCGTGCCCCATGCTGTCAGTACTTGACC
TTCTTCCCCCGTACTTTACGGCCCCTTGTTTTTTGTGCCGCCCGTTTACG
CCGCCCGCCGTATTGTATACCCCCCTGTTTATCAACGGCGTCTTTTGCGT
GGGTAACCCAATACGACCGGAATAAACGTAATTGCGCGACAACTTTGCAC
CGGAGTTTCGCCCTATACCCGCCGGCGCGCGCTCCGCCTATGGTGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g14.b1 MSMg01no232_g14.b1 CHROMAT_FILE:
MSMg01no232_g14.b1 PHD_FILE: MSMg01no232_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:54 2005
         (311 letters)



>mm_chr6_37016291_37017001
          Length = 711

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataaatgatagggtatggctatgttgaggttattatgtatagaactaggcacca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaatgatagggtatggctatgttgaggttattatgtatagaactaggcacca 264

                                                                       
Query: 65  gccccgcttggccctggttgctatagtttgccaactgggttggagtgaaatgaaaagcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccccgcttggccctggttgctatagtttgccaactgggttggagtgaaatgaaaagcag 324

                                                                       
Query: 125 gcatggaggcgagaaactaataaagcccagcatctgtttcggataaaggggccaagcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatggaggcgagaaactaataaagcccagcatctgtttcggataaaggggccaagcagg 384

                                                                       
Query: 185 tacttttcagagtagataagatgggaaataaaaagaaaaagaagagtaaatgggacagag 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 tacttttcagagtagataagatgggagataaaaagaaaaagaagagtaaatgggacagag 444

                                                                       
Query: 245 gtgtgggatcttgacgaatacgcatggtcacatataagggaatggatgtgatttagtggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtgggatcttgacgaatacgcatggtcacatataagggaatggatgtgatttagtggg 504

                 
Query: 305 cacatg 310
           ||||||
Sbjct: 505 cacatg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)