BAC Information

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BAC

Clone NameMSMg01-232I19
Chromosome6 (Build37)
Map Location 89,946,001 - 89,946,330
singlet/doubletsinglet
Overlap genenone
Upstream gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8
Downstream geneV1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232I19.T7 (MSMg01no232_i19.b1)MSMg01-232I19.TJ (MSMg01no232_i19.g1)
ACCAG399020AG399021
length750752
length of high quality
(start - end)		639 (46 - 684)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no232_i19.b1 PHD_FILE: MSMg01no232_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:04 2005CHROMAT_FILE: MSMg01no232_i19.g1 PHD_FILE: MSMg01no232_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTTTAAATGCTGAGTAGTACTCCATTGTGTAAATGTGCCA
CATTTTCTGTATCCATTTCTCTGTTGAGGGACATCTGGGTTCTTTCTAAC
TTCTGGCTATTATAAATAAGGATGCTATGAACATAGTGGAGCAAGTGTCC
TTATTACCAGTTGGAGCATCTTCAGGGTATATGCCCAGGAGAGGAATTGC
TGGTTCTTCCAGTAGTACTATGTCTAATTTTCTGAGGAACCGCCAGACTG
ATTTCCAGAATGGTTGAACCAGCTTGCAATCCTACCAACAATAGAGGAGT
GTCCCTCTTTCTCCCCATCCTCACCAGCATCTGCTGTCACCTGAATTTTT
TATCTTAGCCACCCCCAATGGGGTGAGGTGGAATCTCATAGTTGTTTTGA
TTTTCATTTCCCTGATGATTAAGGATTTTGAACATTTTTTCAGGTGCTTC
TCACCTCTTCAGTATTCCTCAGTTGAGAATTCTTTGTTTAGCTCTGTACC
CCATAATGGACACTCTTAATGCACACTCTTATGTACAAGCACATACATAT
TAACACACCCAGAAAAAAACTTACCAAATAAAACCAGTCTACAAATGTAT
CTGGTTACTTTGTGTGCACATTATAATTTTATAACGTATCTGTATATATT
TGGAATATGTAAATGCTAACAGTTCCTATATGTCATTTTTCTTGAGAACN


CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATCTCCAGAGTTGTCTCCCTTT
GGGTTTTCTTTATTGTTTCTATTTCCATTTTTAGTTCTTGGATGGTTTTG
TTCAATTCCATCACCTGTTTGGTTATGTTTTCCTTTAATTTTTTAAAAGA
GATTATTGAGTTTCCTCTCCAAGGACTTCTACCTGTTTAGCAGTGTTTTC
CTGTAATTCGTTAAGAACTTCTACCTGTGTAGCAGTGTTCTCCTGTATTT
TTTAAGTGAGTTATTAATGTCTTAAAATCCTCTACTATCATCATGAGATA
TGATTTTTATTTTTTACACTCGCCCCCCCGATTTTTTTGGGGGGGAGCGG
TATCCAGGACTCGCCGCGTTGAAAGTACTGATGATTCCAAGTGGCTTTGG
TTCCTGTTAGTAGTATTCTTACATTTGTCTTTTTCCATCTGGTAATCTCT
GGTGGTAGATTTTCTAGCTGTCTCTCGTTGGAGCTTGTTCCTCCTGTGAT
TCTGTTAGCCTCTGTCAGTACTCCTGGCAGTCCAATTCTCTCCTGAGACC
TAGTGGTAAGAGCTCTCTTAGCAGACAAGCTCTCGCCTTGTAGGGAAGGT
GCCCAGAATTCTGTAGTTCAGATCCACCTCCTGAATCCCTGTGTTCTAGC
CTTCTGTACGTTGCGTTTCTTCTGTTGTCGAAGGTCCTCACGTTCCCTGT
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_i19.b1 MSMg01no232_i19.b1 CHROMAT_FILE:
MSMg01no232_i19.b1 PHD_FILE: MSMg01no232_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:04 2005
         (639 letters)



>mm_chr6_89945292_89946330
          Length = 1039

 Score =  557 bits (288), Expect = e-162
 Identities = 321/332 (96%), Gaps = 4/332 (1%)
 Strand = Plus / Minus

                                                                        
Query: 310  ctctttctccccatcctcaccagcatctgctgtcacctgaattttttatcttagccaccc 369
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |
Sbjct: 1039 ctctttctccccatcctcaccagcatctgcggtcacctgaattttttatcttagccattc 980

                                                                        
Query: 370  ccaatggggtgaggtggaatctcatagttgttttgattttcatttccctgatgattaagg 429
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  agaatggggtgaggtggaatctcatagttgttttgattttcatttccctgatgattaagg 920

                                                                        
Query: 430  attttgaacattttttcaggtgcttctca-cc-tcttcagtattcctcagttgagaattc 487
            ||||||||||||||||||||||||||||| || | ||  ||||||||||| |||||||||
Sbjct: 919  attttgaacattttttcaggtgcttctcagccat-tt-ggtattcctcaggtgagaattc 862

                                                                        
Query: 488  tttgtttagctctgtaccccataatggacactcttaatgcacactcttatgtacaagcac 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  tttgtttagctctgtaccccataatggacactcttaatgcacactcttatgtacaagcac 802

                                                                        
Query: 548  atacatattaacacacccagaaaaaaacttaccaaataaaaccagtctacaaatgtatct 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  atacatattaacacacccagaaaaaaacttaccaaataaaaccagtctacaaatgtatct 742

                                            
Query: 608  ggttactttgtgtgcacattataattttataa 639
            ||||||||||||||||||||||||||||||||
Sbjct: 741  ggttactttgtgtgcacattataattttataa 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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