BAC Information

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BAC

Clone NameMSMg01-233D22
Chromosome6 (Build37)
Map Location 37,381,185 - 37,381,393
singlet/doubletsinglet
Overlap geneCreb3l2
Upstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
Downstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233D22.T7 (MSMg01no233_d22.b1)MSMg01-233D22.TJ (MSMg01no233_d22.g1)
ACCAG399509AG399510
length710793
length of high quality
(start - end)
318 (44 - 361)213 (81 - 293)
definitionCHROMAT_FILE: MSMg01no233_d22.b1 PHD_FILE: MSMg01no233_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:55 2005CHROMAT_FILE: MSMg01no233_d22.g1 PHD_FILE: MSMg01no233_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGAGATCCTCCTGCTTCTGCCTCCTGAAGGCTGGGACTTAGGCTA
TGTACCACCATGCTTAGTTTATTTATCTACTTTTCTTTTGGGGTGTTGTG
TGAGGGTGAACTTTGTATACTACATGCCTTTGCAGACCAGTAACTCCCTT
GGAACTGAAGTTATTGGTGATCGTGATCTGTCTGATATGGGTGCTGGGAA
CTGAGCCCAGGTCTTCTAAAGAGCATTGAATACTCTTAACCACTGAGCTA
TCTTCCCAGCCCCAATGCTATGAATCTTACAGACGAGAAAGTATTTGACT
TAACCTCTAGGATCTTGGTTCACAACCTGACACTCTTTCTACTACTACAC
AAACAGGCCTCAGAGTTTTTTAAAAAGGAATTTGCTCCAACTTGGGTATT
GCTTAGATTTTTTGCTAGACATAAACAGTGTTATTTCAGAATTTGTGTTG
TTGCTCTAGCAGATATAGCATGAAGGGTTAATTCTCCTTGTCTCCGTGCC
ACACCTTTACCTAAGTGGCAGACATTCACCCAAGCCTGTCTAATATTGAA
AGAAGTGTCTTCAATATTTCTGTCTGGCTTGGAACTCCAAGAGCATCCTG
CTCATCCCTCATCCTGGTCGGTACAGGCAAGGGTTCACAGGAGCCTTTAT
TGTTAACATG
NNCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGATCTTCCTCCCTTTC
ATTTGTCATTCCACTCCCCACGCTGCAAAAAGAGCCTGAACACAGCTCTG
CTGCAAAACACATTCCAGGTATTTAATGACTTGTAACTCAATGACCTCCT
TGCCTGTCTTCCTTCCCACTCTGCCTACCTACAGGGGCAGGCTTTGAAAG
TAAGGGAGGGAGAGGGGAAAAGAGAGGGGAGAGGAGAGANANNNNNNCNN
ANANNNNNANACNAANANACAATGTTTTTTTTTACCAGACTGAGAAACAG
AAACAGAGTGAGAGTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTGATNA
ATGATATTGTAGGAGGATTTTGTTTACCCCCACCACAATAAAAAAAAAAT
TTGGTCGGGGGGGGTGGCGTGCCCCTTCTATATTGAAAAATATCTTAGCC
CCATTCAACACAGCACTGCCCCCCTTATTGTCTAGATTAAAATATATTAT
ATCCCCTTACCCTTTTTCATTGTCCCCTTTTATTCTCCCATCTACCCATT
TTCCTCTCCCTAATTCTTTTCTTATTCACCCAACCTCTATATTCAACAAC
CATAATATTATCTAAATATTAACTCACACCCCTTTTCTTATTTTTTATCT
ACCGCCACACCATCTTCCCAACATTCCACACCCTGTCATTCCTATCCATC
ACTTTTTTATAACACACTCTACACAATTAATCTATTTTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_d22.g1 MSMg01no233_d22.g1 CHROMAT_FILE:
MSMg01no233_d22.g1 PHD_FILE: MSMg01no233_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:55 2005
         (213 letters)



>mm_chr6_37380985_37381597
          Length = 613

 Score =  381 bits (197), Expect = e-110
 Identities = 206/209 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagatcttcctccctttcatttgtcattccactccccacgctgcaaaaagagcctgaa 60
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctcagatcttcctccctttcgtttgtcattccactccccacgctgcaaaaggagcctgaa 260

                                                                       
Query: 61  cacagctctgctgcaaaacacattccaggtatttaatgacttgtaactcaatgacctcct 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cacagctctgctgcaaaacacattccaggtatttaatggcttgtaactcaatgacctcct 320

                                                                       
Query: 121 tgcctgtcttccttcccactctgcctacctacaggggcaggctttgaaagtaagggaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctgtcttccttcccactctgcctacctacaggggcaggctttgaaagtaagggaggg 380

                                        
Query: 181 agaggggaaaagagaggggagaggagaga 209
           |||||||||||||||||||||||||||||
Sbjct: 381 agaggggaaaagagaggggagaggagaga 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)