Query= MSMg01no233_h22.b1 MSMg01no233_h22.b1 CHROMAT_FILE:
MSMg01no233_h22.b1 PHD_FILE: MSMg01no233_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:12 2005
(580 letters)
>mm_chr6_17005301_17006280
Length = 980
Score = 1033 bits (534), Expect = 0.0
Identities = 567/580 (97%), Gaps = 6/580 (1%)
Strand = Plus / Plus
Query: 5 gaattcattgtatctggaatgtaagaccaagaaatcagctctcctggagcttaaattagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtatctggaatgtaagaccaagaaatcagctctcctggagcttaaattagc 264
Query: 65 tctgatgggaaaaaaatgggaattcttccagggtgtaattatgctgcaggacaaaagcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 tctgatgggaaaaaaatgggaattcttccagggtgtaattatgctgcaggacaaatgcaa 324
Query: 125 aaccgatcatttttgttttttatattgagctttgttttgtctggcctgcatattgttcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaccgatcatttttgttttttatattgagctttgttttgtctggcctgcatattgttcta 384
Query: 185 ccaaatagcagccagttcatttgcagtaggtcaaatagcaatctccaaagttcataacca 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaaatagcagccagttcacttgcagtaggtcaaatagcaatctccaaagttcataacca 444
Query: 245 gccagaacttcagaatgtgaccttatctggaaatagccttctcagatatacttagttatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccagaacttcagaatgtgaccttatctggaaatagccttctcagatatacttagttatg 504
Query: 305 atgaggtcatacagatgtgggtgggccttaacgttgatgactcgtttgtttataaagaga 364
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 505 atgaggtcatacagatgtgggtgggccttaaggttgatgactcgtctgtttataaagaga 564
Query: 365 ggaaaaaaagacttgaccatgagcatacacaaggagaagatgaccacatgatgggggagg 424
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 ggaaaaaa-gatttgaccatgagcatacacaaggagaagatgaccacatgatgggggggg 623
Query: 425 g----a-caaattggagggaagccagagaatgacagggaatcccagcagatagccataac 479
| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggggagcaaattggagggaggccagagaatgacagggaatcccagcagatagccataac 683
Query: 480 caggaagctgaagggacggcttcttcctggagctatcagagaaaggacagttctttttac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caggaagctgaagggacggcttcttcctggagctatcagagaaaggacagttctttttac 743
Query: 540 cactttgatatttgcattgccagttggtttacagaactga 579
||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cactttgatatttgcattgccagttggtttacagaactga 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_h22.g1 MSMg01no233_h22.g1 CHROMAT_FILE:
MSMg01no233_h22.g1 PHD_FILE: MSMg01no233_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:12 2005
(640 letters)
>mm_chr6_17064407_17065446
Length = 1040
Score = 1214 bits (628), Expect = 0.0
Identities = 637/640 (99%)
Strand = Plus / Minus
Query: 1 ctcatggtagccttttattactgtttttaagtctccaagcactgccaaacatcttgagct 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 840 ctcatggtagccttttattactgtttttaagtctccaggcactgccaaacatcttgagct 781
Query: 61 ttgtggaatgattataaactttataaagataaacctttgattccactttgaaattctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttgtggaatgattataaactttataaagataaacctttgattccactttgaaattctgct 721
Query: 121 gcagcgtgccaaaattacaataaaattgcatatatttcaaaaccaaagacctataaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gcagcgtgccaaaattacaataaaattgcatatatttcaaaaccaaagacctataaagcc 661
Query: 181 atttggatcattcagtcctacaaagaaaaagaatgttagtatcattgtgcaactgataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atttggatcattcagtcctacaaagaaaaagaatgttagtatcattgtgcaactgataaa 601
Query: 241 tgggcattgctgactttcagaagaaaacagaaaactccgaagtagtgctcgtggctgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgggcattgctgactttcagaagaaaacagaaaactccgaagtagtgctcgtggctgcag 541
Query: 301 agctagcttattttctggactggctgcttgcagattctttgcatatttagaaagctaccc 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 540 agctagcttattttctggactggctgcttgcatattctttgcatatttagaaagctaccc 481
Query: 361 ctttacaatctctaaaacatttgttagaaacacttcataatgtgagtttgtttcccttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctttacaatctctaaaacatttgttagaaacacttcataatgtgagtttgtttcccttgg 421
Query: 421 cacctcagctgagaggatcttgctttcagctcagaactggaggagttttgttaggaataa 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cacctcggctgagaggatcttgctttcagctcagaactggaggagttttgttaggaataa 361
Query: 481 aaagatttctgtgtgtagcaagtggtggtgctgctgccgctgccagcctccttgtcaggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaagatttctgtgtgtagcaagtggtggtgctgctgccgctgccagcctccttgtcaggt 301
Query: 541 aggaatccccatggagcaattccttaaggagtgcccttccctgtgaaggatgaggttctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aggaatccccatggagcaattccttaaggagtgcccttccctgtgaaggatgaggttctt 241
Query: 601 gcaagttgaaatcacggaatgggtaaatgagcaaaggcca 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcaagttgaaatcacggaatgggtaaatgagcaaaggcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
