BAC Information

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BAC

Clone NameMSMg01-233M02
Chromosome6 (Build37)
Map Location 43,028,998 - 43,107,937
singlet/doubletdoublet
Overlap geneIgk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438
Upstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841
Downstream geneOlfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233M02.T7 (MSMg01no233_m02.b1)MSMg01-233M02.TJ (MSMg01no233_m02.g1)
ACCAG399855AG399856
length724721
length of high quality
(start - end)		681 (44 - 724)296 (73 - 368)
definitionCHROMAT_FILE: MSMg01no233_m02.b1 PHD_FILE: MSMg01no233_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:32 2005CHROMAT_FILE: MSMg01no233_m02.g1 PHD_FILE: MSMg01no233_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,028,998 - 43,029,675)(43,107,646 - 43,107,937)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TGATTGTAAAGCAATTTGTGCTGATTAGAAAATTCATACTAAAAATATAC
ATACTTAATACTCAAACCCAAGGAATGTGCAGAAATAAAATCAAAACAAT
ATTTAAATGAACCACAATGACTCTTTTATAAGTCTCACTGAGCTCCATCT
AATATTCAGCTGTGGGTTTCTTTCCAACGGAAGCTGGGTGGAGCCTCTCA
AAGAACAGTTATGCTAGGTTCCTATCTACAAGCATAACAGAATTATATAA
GAGTGTCAATGATTGGTTATTGCCCATAGAACGTGTCTCAGTTTGGGGCA
GTCATTGGTTAACCATAGCCTCCATCTCTATCTTTGTTCCTGCCTCTTTT
GTAGGAAGAACCCAACACAATTATTTAACAGACCTTGAAAAACCAGTTCT
CAACCTCAGACGAAAAAGCAAGAATCCAGTACAGCTAAAACAATCATGAA
CAATAAAAGAACTTCTGGAGATATCACCATGTCTGATCTCAAGCTATATT
CCAGACCAATAGTAATTAAGCCTGCATGGTCTCACCCTCCCTTCCACCCT
CTCTCCATGTGGCTATGGCCACCCTCTACTTCTAAACATTTCTTACTCTC
TCTGCCTTTCTACAATAAATGCCTTANAACCATGAACCTTTATCTGGATC
CCCAATGCTAAAGCAATGGAGCAG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATGGGGGCTATTTTTAACTGAGCTGT
ACTGCTAGTCCTTATATTTTTCTTTAAATGCATCTTTTGAGCAGGACAGG
TAGTAGTTAGAAATGCCTTTTTCTTTTGAGAAGATAGCAAGATAATAGTT
AGTTAGTTGGTTTTGTTTATTCTAGACAGGGTTTATCTGTGTATCCCCGG
CTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTCAAACTCAGAAATT
TGCCTGCCTCTGTTTTGTTTTTGTTTCTTTGTTTTTGTTTTGCAAAATAA
TATTTAAATCTTTGCTTCCCCCACGGTAAATACTGAAAAGAAATCTGTGT
GTAAACACAAAGCCTAGAGATTGCCACACTGATTTGAACATTGGCTTTGA
AGCCCTAAGAAGGGAGACTACTAAAATATATACTGTTGTGGTATAAATAT
GAATGCCCTTAGGATATCATATATTTGAACACTTAGTGCCCAGTTGGTGG
TACCATTGGAGAAGGCTGAGTAATATCTAGGAGATGAAACCTTGCTGCAG
AAAATGTGTGATTAATATGGGTGCTGAGATTTAATAACCTGGTCCCACTT
TCTGTTCATATTCTGCTTCAAGCGTGAATGCAATGTGACTAACCAGACTT
TTCCCTGCCACAAACCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_m02.b1 MSMg01no233_m02.b1 CHROMAT_FILE:
MSMg01no233_m02.b1 PHD_FILE: MSMg01no233_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:32 2005
         (681 letters)



>mm_chr6_43028795_43029875
          Length = 1081

 Score = 1205 bits (623), Expect = 0.0
 Identities = 664/678 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaatgattgtaaagcaatttgtgctgattagaaaattcatactaaaaatatacatactt 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatgattgtaaagcaatttgtgctaattagaaaattcatactaaaaatatacatactt 263

                                                                       
Query: 64  aatactcaaacccaaggaatgtgcagaaataaaatcaaaacaatatttaaatgaaccaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatactcaaacccaaggaatgtgcagaaataaaatcaaaacaatatttaaatgaaccaca 323

                                                                       
Query: 124 atgactcttttataagtctcactgagctccatctaatattcagctgtgggtttctttcca 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 atgactcttttataagtctcactgagctccatctaatattcagctgtgagtttctttcca 383

                                                                       
Query: 184 acggaagctgggtggagcctctcaaagaacagttatgctaggttcctatctacaagcata 243
           | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 384 atggaagctgggtggagcctctcaaaggacagttatgctaggttcctgtctacaagcata 443

                                                                       
Query: 244 acagaattatataagagtgtcaatgattggttattgcccatagaacgtgtctcagtttgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagaattatataagagtgtcaatgattggttattgcccatagaacgtgtctcagtttgg 503

                                                                       
Query: 304 ggcagtcattggttaaccatagcctccatctctatctttgttcctgcctcttttgtagga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcagtcattggttaaccatagcctccatctctatctttgttcctgcctcttttgtagga 563

                                                                       
Query: 364 agaacccaacacaattatttaacagaccttgaaaaaccagttctcaacctcagacgaaaa 423
           || ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 564 aggacctaacacaattatttaacagaccttgaaaaaccagttctcaacttcagatgaaaa 623

                                                                       
Query: 424 agcaagaatccagtacagctaaaacaatcatgaacaataaaagaacttctggagatatca 483
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agcgagaatccagtacagttaaaacaatcatgaacaataaaagaacttctggagatatca 683

                                                                       
Query: 484 ccatgtctgatctcaagctatattccagaccaatagtaattaagcctgcatggtctcacc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatgtctgatctcaagctatattccagaccaatagtaattaagcctgcatggtctcacc 743

                                                                       
Query: 544 ctcccttccaccctctctccatgtggctatggccaccctctacttctaaacatttcttac 603
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctcccttcgaccctctctccatgtggctatggccaccctctacttctaaacatttcttac 803

                                                                       
Query: 604 tctctctgcctttctacaataaatgccttanaaccatgaacctttatctggatccccaat 663
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 804 tctctctgcctttctacaataaatgccttaaaaccatgaacctttatctggatccccagt 863

                             
Query: 664 gctaaagcaatggagcag 681
           ||||||||||||||||||
Sbjct: 864 gctaaagcaatggagcag 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no233_m02.g1 MSMg01no233_m02.g1 CHROMAT_FILE:
MSMg01no233_m02.g1 PHD_FILE: MSMg01no233_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:32 2005
         (296 letters)



>mm_chr6_43107606_43108301
          Length = 696

 Score =  545 bits (282), Expect = e-160
 Identities = 291/296 (98%), Gaps = 4/296 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgggggctatttttaactgagctgtactgctagtccttatatttttctttaaatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acatgggggctatttttaactgagctgtactgctagtccttatatttttctttaaatgca 273

                                                                       
Query: 61  tcttttgagcaggacaggtagtagttagaaatgcctttttcttttgagaagatagcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcttttgagcaggacaggtagtagttagaaatgcctttttcttttgagaagatagcaaga 213

                                                                       
Query: 121 taatagttagttagttggttttgtttattctagacagggtttatctgtgtatccccggct 180
           |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 taa----tagttagttggttttgtttattctagacagggtttatctgtgtatccccggct 157

                                                                       
Query: 181 gtcctggaactcactctgtagaccaggctggtctcaaactcagaaatttgcctgcctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtcctggaactcactctgtagaccaggctggtctcaaactcagaaatttgcctgcctctg 97

                                                                   
Query: 241 ttttgtttttgtttctttgtttttgttttgcaaaataatatttaaatctttgcttc 296
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 96  ttttgtttttgtttctttgtttttgttttgcaaaataatatttaaaactttgcttc 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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