BAC Information

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BAC

Clone NameMSMg01-233N12
Chromosome6 (Build37)
Map Location 47,755,476 - 47,755,759
singlet/doubletsinglet
Overlap genePdia4
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379
Downstream geneLOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233N12.T7 (MSMg01no233_n12.b1)MSMg01-233N12.TJ (MSMg01no233_n12.g1)
ACCAG399916AG399917
length858735
length of high quality
(start - end)
---284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no233_n12.b1 PHD_FILE: MSMg01no233_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:39 2005CHROMAT_FILE: MSMg01no233_n12.g1 PHD_FILE: MSMg01no233_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGAATCCGC
GGAAATTCATGATCATATCCAATTCCTCGAATTTGGTCTAAGTCCTTTCC
GNGAAATCAGTTCGGATTTAAATCATCCCCCCATCGGGGGTTTGNNNNNN
NNCNNNNNNNCNNNNNCNCCNCNNCCCCCCNCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCTNCCCCCCCCCCTCCCCCNCCCNCCCCCCT
CCTCTTCTTCTCTTCCTTCCCCCCCAACCCCCTCTCCCCCCCTCTCCCCC
CACCCCCCCCTCCCCCCCCCCNCNNCCCCATTTTTTTTCCACCCCCCCAA
CAAACACAACAATAAAAAAAAAATTATATTTTTTTACCCCCCCCCCCCCC
CCCCANACCCACAAAAAAATAAAAAAATAACAAAAACCCAACACTCTCCC
CCCCACAAAAACAAAAACAACCACAACCCCACACAACTATACCACCCCCA
CCAACAAATACCACACCCACAACTCCCACAACACACAATAACAAAAACCC
CACCAAAACACATAAACCCCCCCACTCACACAACAAACACCACCCCCCAA
AACCCTATACCCCCCCTAAAATACAAACACCCCCCCTCAACAACATCTAA
TAATAAACCAAATCACCCATTATATACTTAAAAACAAACAGCACCCAACA
CACAAACCACAAAACAACACCACAAACACCCCAAACACAAAACAAAACCC
CCCTCCAACCAAACCATAAATTATTTCTAACCCACCAACCCCCCCCCACC
TTTTTCCACCCCCCAACTAAATCACAACATAACACCTTCAAACTAAAAAC
CGACAAAN
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCATTCCTTGCCACGGGCTCTGACTT
TTGAGCCGACTTAGCATTTGCCTGGGTGAGTCACTAGAATAAAGACTAAA
TTGCTTGCTCTACACAATTTGTGTGGCCTTATGGTTCCAGAGAAAGTTCC
AGGAAAGACAGGATTACACAGATAACCCCTGTCTCCAAAAAATAAATAAG
TAAGTAAATAAATAAATTAAAAATAAATAAAATAAAAGTTCCCTCAAGTG
TCTGCATGGATGAGGCCCTGAGTGTCAGCAAGGAAAAGAAGTTTGTTGTG
TTAGAATCATTAGGCAGACACTGCGCCTGATGCATAGCAAGGAGCTAGTC
TGCCCTGACTCAGGCAGGGCCCGTGTGAACCCAGACCTGTGGCTTTCTGG
ATTCTGCAGCAAAAACCACTATATCTGTTCATTGTTGGGTGTACAGATGA
AATGACAATACAAAGGGATGCCCAAAGGTAAAACAAACTGGGGGAGACGG
AAGGAAATAACGTAGTGTACTGGGGTGCAGATAAGCCAGTGGCACCTTTT
GTGACCCAGCTTGAGTGCTAAAGAGATGCCAGTCCTTACATTGCTATAGA
ATAGGTCTGACATGATCGGCGAGGCATGACTTTGTACTATTGNGTCACCT
GCCCATTCTGGCTTACGACTGTTACTATTATTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_n12.g1 MSMg01no233_n12.g1 CHROMAT_FILE:
MSMg01no233_n12.g1 PHD_FILE: MSMg01no233_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:39 2005
         (284 letters)



>mm_chr6_47755452_47756135
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcattccttgccacgggctctgacttttgagccgacttagcatttgcctgggtgagtca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 308 ttcattccttgccacgggctctgacttttgagccgactcagcatttgcctgggtgagtca 249

                                                                       
Query: 61  ctagaataaagactaaattgcttgctctacacaatttgtgtggccttatggttccagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctagaataaagactaaattgcttgctctacacaatttgtgtggccttatggttccagaga 189

                                                                       
Query: 121 aagttccaggaaagacaggattacacagataacccctgtctccaaaaaataaataagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aagttccaggaaagacaggattacacagataacccctgtctccaaaaaataaataagtaa 129

                                                                       
Query: 181 gtaaataaataaattaaaaataaataaaataaaagttccctcaagtgtctgcatggatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gtaaataaataaattaaaaataaataaaataaaagttccctcaagtgtctgcatggatga 69

                                                       
Query: 241 ggccctgagtgtcagcaaggaaaagaagtttgttgtgttagaat 284
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 68  ggccctgagtgtcagcaaggaaaagaaggttgttgtgttagaat 25



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                          
Query: 80  gcttgctctacacaatttgtgtggccttatggttccagagaaagttc 126
           |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcttgcactacacaatttgtgtggccttatggttccagagaaagttc 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)