BAC Information

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BAC

Clone NameMSMg01-234C06
Chromosome6 (Build37)
Map Location 21,245,675 - 21,245,965
singlet/doubletsinglet
Overlap geneKcnd2
Upstream geneLOC100040838
Downstream geneLOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234C06.T7 (MSMg01no234_c06.b1)MSMg01-234C06.TJ (MSMg01no234_c06.g1)
ACCAG400122AG400123
length715717
length of high quality
(start - end)
231 (129 - 359)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no234_c06.b1 PHD_FILE: MSMg01no234_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:01 2005CHROMAT_FILE: MSMg01no234_c06.g1 PHD_FILE: MSMg01no234_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCCCTGATTAACACCGAATGGCTGAGAAACACCCGAAAAAATGTCA
GCATCCTTAATCACCATTTTTATCTCAATCAAAACAACCCTGAGATTCTA
TCTCACACCAGCCAGAATGGCTAAGATCAAAGATTCAGGTGACAGCAGAT
GCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGGAATCAGTCTGGCAGATTTTCAGAAA
ATTGGACATGGTACTACCGGATGATCCTGCAATACCTCTCCTGGGCATAT
ATCCAGAAAATGTTTCTTTTACCCCCACCCACCATGCTCCACTATGTTCA
TAGCAGCCTCATTTATAACACCCAGAATATGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGAATACAAAAAAATGTGGTACATTTACACAATGGAGC
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATTG
TTGGACCTGGAGGGCATTATCCTGTGTGAGGTAACCCAATCACAATAGAA
CTCAAATGATATGTACTCACTGATAAGTGGATATTAGCTCAGAAACTTAG
AATACCCAAGATATAAGTTACAATTTGAAAAACACATGAAACTCAAGAAG
AACGAATACCAAAGT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATATTTGAATTTTGTTTTCTGGAG
GGACAGGGTAATTTAAATATTTAATTCACCATAAAAATAAAGGAATTATG
AAACAGAGCATAATATTCTTTATTTTACTTCAAATATGATAAAATTATTT
TTACATGCTCCACAAAACACCCTTATCAGAATAAAGTAATTGTTGTAGAG
CAATCTAGTTTTCCTCATCTGGTAGAGGCAGAAATTGTGGCAGAGCTAAC
TCTTCTAAGAGGCCTTCCATTGATAATTTCAAGAGGAGATTTCTAACCAT
ATTATTTAAAACATTTTTGTTTACTCCCCCCCCCCCGACATTAAAAGGCT
GATGAAGCTGTCAAATTAGAGCCACACAAAGAGAAATCATGAGCCTTGAT
GGAATTATTATGCACTAGACAAAACCAAATTTATACCTGAGGTAGGAGCA
CTGGCTACTGCTGTTCACACAAATGAGCTAAGAAGCATTTTCTCTGATGG
GAATGGTGGTGTCAGCAACCTGCCGCGGGATATGATTGAAACATACCTTC
CAGATTGGTTGTGAACAAATGCATGTTAAATCTCTGTTCTTGCTAACAAA
GGACTCTAAAATCACAAATGAATCCATCACCTGTCACCCCTATGCTTTTG
AATATTACCATAGACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_c06.g1 MSMg01no234_c06.g1 CHROMAT_FILE:
MSMg01no234_c06.g1 PHD_FILE: MSMg01no234_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:01 2005
         (294 letters)



>mm_chr6_21245475_21246168
          Length = 694

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatttgaattttgttttctggagggacagggtaatttaaatatttaattcaccataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatttgaattttgttttctggagggacagggtaatttaaatatttaattcaccataaa 260

                                                                       
Query: 61  aataaaggaattatgaaacagagcataatattctttattttacttcaaatatgataaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaggaattatgaaacagagcataatattctttattttacttcaaatatgataaaat 320

                                                                       
Query: 121 tatttttacatgctccacaaaacacccttatcagaataaagtaattgttgtagagcaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tatttttacatgctccacaaaacacccttatcagaataaagtaattgttgtagagtaatc 380

                                                                       
Query: 181 tagttttcctcatctggtagaggcagaaattgtggcagagctaactcttctaagaggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttttcctcatctggtagaggcagaaattgtggcagagctaactcttctaagaggcct 440

                                                              
Query: 241 tccattgataatttcaagaggagatttctaaccatattatttaaaacattt 291
           |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tccattgagaatttcaagaggagatttctaaccatattattaaaaacattt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)