BAC Information

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BAC

Clone NameMSMg01-234O19
Chromosome6 (Build37)
Map Location 145,058,755 - 145,222,984
singlet/doubletdoublet
Overlap geneLrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866
Upstream geneSox5, 4933425H06Rik, EG665149, Bcat1
Downstream geneLOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234O19.T7 (MSMg01no234_o19.b1)MSMg01-234O19.TJ (MSMg01no234_o19.g1)
ACCAG400662AG400663
length769746
length of high quality
(start - end)
233 (134 - 366)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no234_o19.b1 PHD_FILE: MSMg01no234_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:04 2005CHROMAT_FILE: MSMg01no234_o19.g1 PHD_FILE: MSMg01no234_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,058,755 - 145,058,986)(145,222,695 - 145,222,984)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATAAGCGG
AATTCTATCAGAGCCTTTCTGAAAGGCAGGAATTCTGGAGCGATGGTGCC
TAGGCTTTGAAGCGTCCTTTTTAAACCGTCAGAGATTGTTATCTGAGGTT
TATGGAGTTGTAGTTCCTGAAGGATTCATAGAGCCTTTGCCCAGCTTAGT
CCTAGAGACATACCGGGCAAACCTGAAAGGTTCTTATGGCTAAGCATTGC
TTAGGTAACGGCTCCTTCGGAGAACTCCTAGATCAGATAAGAGGTTTTGG
TGTGTGGAAACTGGCTTGCTAAAGGTTTTGAGCTTCCAAAAGGCTCCTTA
GCAGTCTAGTCCTTCTTTTTTTGATCTCTGTCCTGCTGAGAAGCCAAAAT
TCATCCTGCAGTCTCTATCTTTATCCCATATAACAAAGAACACCGACAGT
GCACCTTCCTTCCCTTTTTCCAGGCTATGTAATCTTCTCTATAGAGTCAC
TGTGTGTGTGTGTGTATGCATGTGTGTGTGTGTGTGTGTATGTGTGTGTG
TGTGTGTGTACATGTCCCGCTCCCCTTCCTTCTTTTCCCTTTTTATCCCC
CCNNCGTATTCTTACCCCCTTCTTCTCTTTTCCCTTTTTCTTTCTTTTTG
TCCCCCTTTCCTTCTGCTTTTTTTCTTTTTCTTTTCCCTCTATCCTTCAT
TTCTCCCCCGTTTTCTCTTCCTTTCTCCCCCTCTATTTTCCCTCTTTTTT
TTCTCTTTTCCCCTTCCCT
CGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCCGGCTGGGGAGCAACCATGCCGGAG
AATATGAAGCACGTGGTTCTAGTTCCTTCCAGCCTTCTAAGTGTGTCAGC
TCTTTGAAATGGCTCCAATTTCACGGTGACATAGTCAGTAATTCCTAGAA
TAAGAACTTTCCTTTTCTAATTGGAACACAACTCTTAAGTAATCTGAGTC
CTGGTGGGGTGTGGCCACTACCCAAGAGGCTGGGACAGATGACACAGAGG
CTGCGAAGTCATAAAGGACTGGTCTGTCCATCCAGGAATGACAAGCAGTC
TTTAAAGAAACCTTGNTTTACTTCCGAGGGCAAGGCTGACATTTGTTGCG
CAACAAGAATGAAGGTTTAAGAAAGTTACTCAAACAAAATCATAAGGCGG
CGCTGTAGATCTCATCTTGAAGATAAGGACATTGGAAGCTAAGCAGGCGA
AGTCATGTGCTCAATGCCGAACACGTTCAAAGATTACTGAATGGAGTCAT
TTATCTAGCTGTTTTCTCTGCAGCGTGTGAGAATTGAACCCAGGGACCCA
TGCACAAGAATCAAGCAGTCTACCACCAAGCTACATCCTTGAGCCAGTTT
CCACAGCTTTCATGTAAATGTAGAACTGAGCTAAAACATAACACTTGTTT
GTAAAAAATCATATTAAATCAGAGGCTAGGGAGAGACTCATTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_o19.b1 MSMg01no234_o19.b1 CHROMAT_FILE:
MSMg01no234_o19.b1 PHD_FILE: MSMg01no234_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:04 2005
         (233 letters)



>mm_chr6_145058555_145059187
          Length = 633

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgttatctgaggtttatggagttgtagttcctgaaggattcatagagcctttgccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattgttatctgaggtttatggagttgtagttcctgaaggattcatagagcctttgccca 260

                                                                       
Query: 61  gcttagtcctagagacataccgggcaaacctgaaaggttcttatggctaagcattgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttagtcctagagacataccgggcaaacctgaaaggttcttatggctaagcattgctta 320

                                                                       
Query: 121 ggtaacggctccttcggagaactcctagatcagataagaggttttggtgtgtggaaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaacggctccttcggagaactcctagatcagataagaggttttggtgtgtggaaactg 380

                                                               
Query: 181 gcttgctaaaggttttgagcttccaaaaggctccttagcagtctagtccttc 232
           |||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgctaaaggtaaagagcttccaaaaggctccttagcagtctagtccttc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no234_o19.g1 MSMg01no234_o19.g1 CHROMAT_FILE:
MSMg01no234_o19.g1 PHD_FILE: MSMg01no234_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:04 2005
         (290 letters)



>mm_chr6_145222495_145223184
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccggctggggagcaaccatgccggagaatatgaagcacgtggttctagttccttccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agccggctggggagcaaccatgccggagaatatgaagcacgtggttctagttccttccag 431

                                                                       
Query: 61  ccttctaagtgtgtcagctctttgaaatggctccaatttcacggtgacatagtcagtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccttctaagtgtgtcagctctttgaaatggctccaatttcacggtgacatagtcagtaat 371

                                                                       
Query: 121 tcctagaataagaactttccttttctaattggaacacaactcttaagtaatctgagtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcctagaataagaactttccttttctaattggaacacaactcttaagtaatctgagtcct 311

                                                                       
Query: 181 ggtggggtgtggccactacccaagaggctgggacagatgacacagaggctgcgaagtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggtggggtgtggccactacccaagaggctgggacagatgacacagaggctgcgaagtcat 251

                                                             
Query: 241 aaaggactggtctgtccatccaggaatgacaagcagtctttaaagaaacc 290
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaggactggcctgtccatccaggaatgacaagcagtctttaaagaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)