Query= MSMg01no235_d01.b1 MSMg01no235_d01.b1 CHROMAT_FILE:
MSMg01no235_d01.b1 PHD_FILE: MSMg01no235_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:27 2005
(650 letters)
>mm_chr6_110120656_110121702
Length = 1047
Score = 1154 bits (597), Expect = 0.0
Identities = 634/647 (97%), Gaps = 3/647 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagagtgataggctattcaaagactcagagctcttggcatctttgacacatggc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagagtgataggttattcaaagactcagagctcttggcatctttgacacatggc 263
Query: 64 tttcaggactcagtggtacacccaagagaacctcattattccacttgagaatgggctgtg 123
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 tttctggactcagtggtacacccaggagaacctcattattccacttgagaatgggctgtg 323
Query: 124 ctttacctttcactttgccaaaggtagaagagattccttgcaattctggcgacaagagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttacctttcactttgccaaaggtagaagagattccttgcaattctggcgacaagagac 383
Query: 184 ttttcacacactgtttaacatgtctgtccttagttttgtgaccaggacacattgcatatt 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttcacacactgtttaacatgcctgtccttagttttgtgaccaggacacattgcatatt 443
Query: 244 gagcttattgaaacttcttccctaaggatgctttactggtcattatcattttaacaaact 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 gagcttattgaaacttcttccctaaggatgctttactggtcactatcattttaacaaact 503
Query: 304 acctataaaacaactatttttccataattcctttaaatcatttgaaggtttattttcatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acctataaaacaactatttttccataattcctttaaatcatttgaaggtttattttcatc 563
Query: 364 ttaaagtcattatttattttgatttcctctttctaccttagttagctgccaccaaataca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttaaagtcattatttattttgatttcctctttctaccttagttagctgccaccaaataca 623
Query: 424 catcaaagattctaagatttactaagcattgtttaatgggctttaaacaatctaaatcat 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 catcaaagattctaagatttactaagcattgtttaatgggctttaaacaatctaaaccat 683
Query: 484 gggtgaataaagagacaaagatttctctcagacctgaaatctctgaagagaatgaaaact 543
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 684 gggtgaataaagagacaaggatttctct--gacctgaaatctctgaagagaatgaaaact 741
Query: 544 agctttctagtggtgtgggataggaggggttacatacagcatgggggaggaggagttaca 603
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 742 agttttctagtggtgtgggataggaggggttacatacagcatgggg-aggaggagttaca 800
Query: 604 aacagcaggttgttattagttgacttgtcaggaaagatttttatgta 650
|||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 aacatcaggttgttattagttgacttctcaggaaagatttttatgta 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1047
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1037
Effective search space: 663680
Effective search space used: 663680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_d01.g1 MSMg01no235_d01.g1 CHROMAT_FILE:
MSMg01no235_d01.g1 PHD_FILE: MSMg01no235_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:27 2005
(591 letters)
>mm_chr6_110191272_110192262
Length = 991
Score = 1036 bits (536), Expect = 0.0
Identities = 577/591 (97%)
Strand = Plus / Minus
Query: 1 tctaccatgtgggcataagaactggtgaagttgggagtgctcaaaccccaggaagctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tctaccatgtgggcataagaactggtgaagttgggagtgctcaaaccccaggaagctcag 732
Query: 61 agatctgagatggtaggtgtggaactgctgcatcccactctcgagtgcctgctctggaac 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agatctgagatggcaggtgtggaactgctgcatcccactctcgagtgcctgctctggaac 672
Query: 121 aggtaacaaccactaactggttcaccctgaataaagagtatgtgtccacacccctaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aggtaacaaccactaactggttcaccctgaataaagagtatgtgtccacacccctaataa 612
Query: 181 agaaatatgaacaaactaaaatcatttcagagagctgcttcattaaagattaccacgggg 240
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 611 agaaatatgaacaaactaaaatcatttcagagagctgcttcattatagatcaccacgggg 552
Query: 241 aaggtcgtcaacaaaattagccttgacactaagactccggaagagactctcttctcccac 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaggttgtcaacaaaattagccttgacactaagactccggaagagactctcttctcccac 492
Query: 301 ctcggtggtactcagcacttgctcccactgaggccgcatcttgctgatcttgggctctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctcggtggtactcagcacttgctcccactgaggccgcatcttgctgatcttgggctctgt 432
Query: 361 tttgcctttccaacctggcatgcagatgcactgaggggaaacatgaaccacagacccctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttgcctttccaacctggcatgcagatgcactgaggggaaacatgaaccacagacccctg 372
Query: 421 ttcctgctttcctctcagagctggatacagatccaggtaccctaagaggagatccttgta 480
|||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 371 ttcctggtttcctctccgagctgaatacagatccaggtaccctaagaggagatcctcgta 312
Query: 481 ccacagcatttaacccagganagcttccactttcttgtctggcatgaagtggcatctgac 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccacagcatttaacccaggaaagcttccactttcttgtctggcatgaagtggcatctgac 252
Query: 541 acccaagtgctaaaatagggttatggactttgtctcctcctctctgagctg 591
|||||||||||| || |||| | |||||||| |||||||||||||||||||
Sbjct: 251 acccaagtgctagaacagggctgtggactttatctcctcctctctgagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
