Query= MSMg01no235_f16.b1 MSMg01no235_f16.b1 CHROMAT_FILE:
MSMg01no235_f16.b1 PHD_FILE: MSMg01no235_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:40 2005
(324 letters)
>mm_chr6_106142918_106143640
Length = 723
Score = 574 bits (297), Expect = e-168
Identities = 315/321 (98%), Gaps = 1/321 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttccctgggcaataagagcagagaggcatctcaagggagaaacagggcatagt 63
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct: 523 ggaattcttccctggg-aatgagagccgagaggcatctcaagggagaaacagggcatggt 465
Query: 64 aaggtgattttataaatggaaggcaagcagaaacctcatctctttttgattatttttact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaggtgattttataaatggaaggcaagcagaaacctcatctctttttgattatttttact 405
Query: 124 tgggaagcatggcatcttttcctgacacactacaaaattatagcccttcagttggcaaaa 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 404 tgggaagcatggcatcttttcctgacacactacacaattatagcccttcagttggcaaaa 345
Query: 184 ttaaaatttgtattgagtgttattgacccaaaatacatttcaagagagttgttatccact 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 344 ttaaaatttgtattgagtgttattgaccaaaaatacatttcaagagagttgttatccact 285
Query: 244 ctttaaatggacttttattttattagcatttaataatttcataaaataatggatttaatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctttaaatggacttttattttattagcatttaataatttcataaaataatggatttaatt 225
Query: 304 atggcatttcttacttgtgtg 324
|||||||||||||||||||||
Sbjct: 224 atggcatttcttacttgtgtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space: 224910
Effective search space used: 224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_f16.g1 MSMg01no235_f16.g1 CHROMAT_FILE:
MSMg01no235_f16.g1 PHD_FILE: MSMg01no235_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:40 2005
(284 letters)
>mm_chr6_106037485_106038168
Length = 684
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Plus
Query: 1 cttcaatgatggactatgatctagaaggataagccaaataaacctattttcttcccaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcaatgatggactatgatctagaaggataagccaaataaacctattttcttcccaagt 260
Query: 61 tcctttttagtcatgatgcttcatcgaagcaatagaaactcttaggcagttctatacttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctttttagtcatgatgcttcatcgaagcaatagaaactcttaggcagttctatacttg 320
Query: 121 atcttagccaaaagaccaagaagcgattcttaggcagttcgtataaatacatctaaactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttagccaaaagaccaagaagcgattcttaggcagttcgtataaatacatctaaactt 380
Query: 181 tccgacttgaatgtagctttaagcatcaatttatgctcttattgcattagtacattacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccgacttgaatgtagctttaagcatcaatttatgctcttattgcattagtacattacag 440
Query: 241 ttgccttcatctgagatggatgcttataagtgagaaatacaact 284
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgccttcagctgagatggatgcttataagtgagaaatacaact 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
