Query= MSMg01no235_l15.b1 MSMg01no235_l15.b1 CHROMAT_FILE:
MSMg01no235_l15.b1 PHD_FILE: MSMg01no235_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:07 2005
(556 letters)
>mm_chr6_51355292_51356247
Length = 956
Score = 888 bits (459), Expect = 0.0
Identities = 507/523 (96%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 14 taggtgcctcctgttgagtggctgcctcaggctctggtttgggttggtgatgggcctatg 73
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 522 taggtgcttcctgttgagtggctgccacaggctctggtttgggttggtgatgggcctatg 463
Query: 74 gttcacttgtcatttgcagataacttgtatagccctgtcttggtgcagccttccccagag 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gttcacttgtcatttgcagataacttgtatagccctgtcttggtgcagccttccccagag 403
Query: 134 atgtactttctctagctattctcgtgtttgatgtaaattattccttatgtgaggcagtta 193
||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct: 402 atgtactttctctagctattctcttggttgatgtaaattattccttgtgtgaggcagtta 343
Query: 194 ttcagcaacttggagaaagttttagaaagttctccctgagtggttaggcattgactcagg 253
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttcagcaacttggagaaagctttagaaagttctccctgagtggttaggcattgactcagg 283
Query: 254 gaggtctgattggccactcttgttgtagagtgcaacgctttagggtctgtggatttatag 313
|||||||||||||||||| |||||| ||| ||||| || |||||||||||||||||||||
Sbjct: 282 gaggtctgattggccactattgttggagaatgcaatgccttagggtctgtggatttatag 223
Query: 314 ttacaagatttttctttccttctttccttccttcctccctccctttcctttccttcccgc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 222 ttacaagatttttctttccttctttccttccttcctccctccctttcctttccttcctgc 163
Query: 374 ccctctctttttctttcttttttttgtattgcagagtaaaggagaggcaggtgtgtttgc 433
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 162 ctctctctttttctttcttttttt-gtattgcagagtaaaggagaggcaggtgtgtttgc 104
Query: 434 accctgtttgttaactttgagccccacagaactgtgaatacatttctgttgttgataagc 493
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 103 accctgtttgttaactttgagccccacagaactgtgaatacatttctgttgtcgataagc 44
Query: 494 ctctgtcagataggactccaggcaggttacctaacctcactgt 536
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 43 ctctgtcagataggactccaggcaggttagctaacctcactgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_l15.g1 MSMg01no235_l15.g1 CHROMAT_FILE:
MSMg01no235_l15.g1 PHD_FILE: MSMg01no235_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:08 2005
(615 letters)
>mm_chr6_51284990_51286005
Length = 1016
Score = 1069 bits (553), Expect = 0.0
Identities = 601/617 (97%), Gaps = 3/617 (0%)
Strand = Plus / Plus
Query: 1 aatatctctcaccactctcccgactccgaaattacatttgggttgctttcccatttgtgg 60
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatctctcaccactcttccgtctccgaaattacatttgggttgctttcccatttgtgc 260
Query: 61 acccctgagattgcagaggccataaatcataaatgccttcagaagttgggaaccctggga 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 acccctgagattgcagaggccataaatcataaatgccttcagaagtcgggaaccctggga 320
Query: 121 agaagacctaaagaccgaagggtgtggttgcaaaggagagtacagaggggagacttttct 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagacctaaagaccaaagggtgtggttgcaaaggagagtacagaggggagacttttct 380
Query: 181 tcatctttaaatgtatatattgggaagatgactatgcagtctagagtgctgggccagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatctttaaatgtatatattgggaagatgactatgcagtctagagtgctgggccagcca 440
Query: 241 tatgagataatgcatggagtacacagtacagtatccagcacactccgttctctcaggcgg 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgagataatgcatggattacacagtacagtatccagcacactccgttctctcaggcgg 500
Query: 301 ctctgtggacagaggagcagtggatgacaacatcagcaggccgcctactctccagtccct 360
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 501 ctctgtggacagaggagcagtggatgacaacatcagcaggctgcttactctccagtccct 560
Query: 361 ctgttgctgcagactgtggctaggagtcctgaccctctggctccaagctgaccactcacg 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtttctgcagactgtggctaggagtcctgaccctctggctccaagctgaccactcacg 620
Query: 421 tcactgtatcacgcctgccacattgtctccaaaggttgccctgtccttgcatggcttggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcactgtatcacgcctgccacattgtctccaaaggttgccctgtccttgcatggcttggt 680
Query: 481 ttctggaacgctaactcaaggcaaaggg-aatgaacaaaggacagacaaagaaggctgag 539
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 681 ttctggaacgctaactcaaggcaaaggggaatgaacaaaggacagacacagaaggctgag 740
Query: 540 attgcatggctgggctctctgttggaaaagcccagg-caccctagagtgtatagtatata 598
|||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||
Sbjct: 741 attgcatggctgggctctctgtcggagaagcc-agggcaccctagagtgtatagtatata 799
Query: 599 caattggactgggaagc 615
|||||||||||||||||
Sbjct: 800 caattggactgggaagc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
