Query= MSMg01no236_e01.b1 MSMg01no236_e01.b1 CHROMAT_FILE:
MSMg01no236_e01.b1 PHD_FILE: MSMg01no236_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:46 2005
(614 letters)
>mm_chr6_24840291_24841303
Length = 1013
Score = 1048 bits (542), Expect = 0.0
Identities = 590/614 (96%), Gaps = 15/614 (2%)
Strand = Plus / Minus
Query: 1 gttgatgatataaggattcaggatggtcttcaagtaatcatgtaagtccagacaagattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 gttgatgatataaggattcaggatggtcttcaagtaatcatgtaagtccagacaagattt 943
Query: 61 ctgtaaaatcataaaatagattatcaaggcataagttctctgtgacaatacactgcacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ctgtaaaatcataaaatagattatcaaggcataagttctctgtgacaatacactgcacca 883
Query: 121 actcttaaaaaaaagcaataggcataccaacattattagtaagtattctttatcacttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 actcttaaaaaaaagcaataggcataccaacattattagtaagtattctttatcacttta 823
Query: 181 acaagcaatattatttaaccaattgttctcctaacattcttaagctttgtgtgccatttc 240
|||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 822 acaagc----------aac----tgttctcctaacattcttaagttttgtgtgccatttc 777
Query: 241 atggtggtgaataattatttagttgagactcgatttggctttgaactccctcagttatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atggtggtgaataattatttagttgagactcgatttggctttgaactccctcagttatta 717
Query: 301 atgaattaatcaaagtgatagaatgtttcaactgtcagaatatgggctttgaatttctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atgaattaatcaaagtgatagaatgtttcaactgtcagaatatgggctttgaatttctct 657
Query: 361 ggccctggtgactggaatcacagctttgtaaatggttttgggaatatctcaaatatccaa 420
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct: 656 ggccctggtgactggaatcacagttttgtaactggttttgggaatatcttaaatatccaa 597
Query: 421 atatcctatttggatgacccaagtccagttgattacactcaagttatataacttgtaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 596 atatcctatttggatgacccaagtccagttgattacactcaagttatataaattgtaaaa 537
Query: 481 taaagatgattttttttaaagcctgatacataggattattacaacaacaaaaagaaaaat 540
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 536 taaagatgattttttttaaaacctgacacataggattattacaacaacaaaaagaaaaat 477
Query: 541 atgtatgtatatctatatgagtcctatgttttctcaattaactatcaataaatcataaaa 600
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 476 atgtatgtatatctatatgaggcctatgttttctcaattaaccatcaataaatcataaaa 417
Query: 601 aaatataagaatca 614
|| |||||||||||
Sbjct: 416 aa-tataagaatca 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_e01.g1 MSMg01no236_e01.g1 CHROMAT_FILE:
MSMg01no236_e01.g1 PHD_FILE: MSMg01no236_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:46 2005
(543 letters)
>mm_chr6_24745685_24746627
Length = 943
Score = 1035 bits (535), Expect = 0.0
Identities = 541/543 (99%)
Strand = Plus / Plus
Query: 1 cctgaaatgtaacacaggaagaagaatcttcagtgtaaatcagtcaccatacattcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaaatgtaacacaggaagaagaatcttcagtgtaaatcagtcaccatacattcatct 260
Query: 61 ccctcagtagcctcatgccacagtctttctaatcttttgcatcaaatactggacagacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcagtagcctcatgccacagtctttctaatcttttgcatcaaatactggacagacca 320
Query: 121 cagtgtgtaagaaggaataagtgcctacttagtaattattctctgtgatgggagagttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtgtgtaagaaggaataagtgcctacttagtaattattctctgtgatgggagagttga 380
Query: 181 gatttaagcacctcttttgggggagctttcttgaatctgggggcacattccaaacagtgt 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 gatttaagcacctcttttgggggagctttgttgaatctgggggcacattccaaacagtgt 440
Query: 241 taatcttccttttgattccatgctccttgactgtggattatagggcagcaccaattttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatcttccttttgattccatgctccttgactgtggattatagggcagcaccaattttat 500
Query: 301 caaatacaactttcctttggatttggaatgtcccaactgaacgttgtgtaggaaatgtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatacaactttcctttggatttggaatgtcccaactgaacgttgtgtaggaaatgtta 560
Query: 361 atgatccaatagatctgagcttcttctctttaattggaagcccccggaaaactgccacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatccaatagatctgagcttcttctctttaattggaagcccccggaaaactgccacag 620
Query: 421 ggcaacatgtcacattattttatgttgatcgacttggtttgtatcctcacatagatgcaa 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcaacctgtcacattattttatgttgatcgacttggtttgtatcctcacatagatgcaa 680
Query: 481 accaagcagaacattatggaggaatacctcagaggggcgattatcaagctcatttgcgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaagcagaacattatggaggaatacctcagaggggcgattatcaagctcatttgcgca 740
Query: 541 aag 543
|||
Sbjct: 741 aag 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
