BAC Information

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BAC

Clone NameMSMg01-236E15
Chromosome6 (Build37)
Map Location 33,447,048 - 33,447,540
singlet/doubletsinglet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236E15.T7 (MSMg01no236_e15.b1)MSMg01-236E15.TJ (MSMg01no236_e15.g1)
ACCAG401591AG401592
length739745
length of high quality
(start - end)
422 (169 - 590)493 (128 - 620)
definitionCHROMAT_FILE: MSMg01no236_e15.b1 PHD_FILE: MSMg01no236_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:49 2005CHROMAT_FILE: MSMg01no236_e15.g1 PHD_FILE: MSMg01no236_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTCTGTACCCCAATTTTTAATGGGGTTATTTGATTC
TCTAGAGTTCAGCTTCTTGACCCCTTTGTATATATTGGATATTAACTCCC
TATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGTCCTT
TTTGTTTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTTT
GTTTGTTTGTTTAATTTTTTTCAAGACAGGTTTTCTCTGTATAGTCCTGG
CTATCCTGCAACTCACTTTGTATACCAGGCTGGCCTCAAACTCAGAAATT
CACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAACGTGTATGCCACCATG
CCTGCCTGTGCACCATGCCTGCCTGTGCATTCTTGATCTTACAGCACAAG
CCATTGCTGTTCTATTTAGGAATTTTTCCCCTGTGCCCATATCTTCGAGG
GTTTTCTCCACTTTCTCCTCTATAAGTTTAAGAGTCTCTGGTTTTATGTG
GAGTTCCTTGATCTACTTAGACTTCAGCTTTGTACAAGGAGATAAGAATG
GATCAACTCGAATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCAT
TTGTTGAAAATGCTGTCTTTTTCCACTGGATGGGTTTAGCTCCCTTGTCA
AAGATCAAGTGACCATAGATGCGTGGGTTCATTTCTGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTAAGTCAGTCTCAAAAAGCTC
TGGTTCCTGAATGCATATTTGACCCCGACTTATAACAGATGGACACAGTT
GGTTCTGGAAAATGGAAAACTATAGCCTAAGCAGTTCATTCAGGGAAAAA
TGAGATACAGGAGAGATGATTGTGTCAGTAGAAGACAGAAGAACAAGCAG
GCAAACAGCAACAAACCTCTTTCCTTATGAAAGTATTAGAGTGCTAAGGA
GGACAAAATAAAAAGACTGACATTATGACCGTTGCCAGGCAACAGGGGAC
ATTACTGTGGTCAAGTATTTTACTTTTATAATCAAAGGATGATAAAACGG
GAGGGGTGGATGCATAAACCTAAATAATTCTTCAACAGAGATAATGGAGG
GCAACAGTCTGCCATATCCCATAGGTAAAAGGAAACAGTCAAAAGATGAG
AAACATATGACAATGTCTCCAGAATAGACTATGACAGATTAGCATCACTT
TACCGTAAAAAGGACTGAAAACATGAAACATAAGCAACTAACTAAAAGTA
AAAATATGACCTTTTCTTCACAAAGGCATTATGTACCTCTAAACTAATGG
TGTGTTACTAAGTGTATGGACACACTCTTATGTAGCTATATGCTATAAAT
TACATCACAAAAGTATAGAAAAATGGGCTACATCTAAAGGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_e15.g1 MSMg01no236_e15.g1 CHROMAT_FILE:
MSMg01no236_e15.g1 PHD_FILE: MSMg01no236_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:49 2005
         (493 letters)



>mm_chr6_33446848_33447740
          Length = 893

 Score =  891 bits (461), Expect = 0.0
 Identities = 485/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttataacagatggacacagttggttctggaaaatggaaaactatagcctaagcagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acttataacagatggacacagttggttctggaaaatggaaaactatagcctaagcagttc 634

                                                                       
Query: 61  attcagggaaaaatgagatacaggagagatgattgtgtcagtagaagacagaagaacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 attcagggaaaaatgagatacaggagagatgattgtgtcagtagaagacagaagaacaag 574

                                                                       
Query: 121 caggcaaacagcaacaaacctctttccttatgaaagtattagagtgctaaggaggacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 573 caggcaaacagcaacaaacctctttccttatgaaagtattagagtgccaaggaggacaaa 514

                                                                       
Query: 181 ataaaaagactgacattatgaccgttgccaggcaacaggggacattactgtggtcaagta 240
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 ataaaaagactgacactatgaccgttgccaggcaacaggggacattactgtggtcaggta 454

                                                                       
Query: 241 ttttacttttataatcaaaggatgataaaacgggaggggtggatgcataaacctaaataa 300
           |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 453 ttttacttttataatcaagggatgataaaacaggaggtgtggatgcataaacctaaataa 394

                                                                       
Query: 301 ttcttcaacagagataatggagggcaacagtctgccatatcccataggtaaaaggaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttcttcaacagagataatggagggcaacagtctgccatatcccataggtaaaaggaaaca 334

                                                                       
Query: 361 gtcaaaagatgagaaacatatgacaatgtctccagaatagactatgacagattagcatca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 333 gtcaaaagatgagaaacatatgacaatgtctccagaatagactatgacaggttagcatca 274

                                                                       
Query: 421 ctttaccgtaaaaaggactgaaaacatgaaacataagcaactaactaaaagtaaaaatat 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctttacggtaaaaaggactgaaaacatgaaacataagcaactaactaaaagtaaaaatat 214

                        
Query: 481 gaccttttcttca 493
           |||||||||||||
Sbjct: 213 gaccttttcttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)