BAC Information

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BAC

Clone NameMSMg01-236G09
Chromosome6 (Build37)
Map Location 24,599,547 - 24,600,271
singlet/doubletsinglet
Overlap geneWasl
Upstream geneCadps2, Rnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2
Downstream gene4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236G09.T7 (MSMg01no236_g09.b1)MSMg01-236G09.TJ (MSMg01no236_g09.g1)
ACCAG401667AG401668
length732795
length of high quality
(start - end)
662 (71 - 732)201 (74 - 274)
definitionCHROMAT_FILE: MSMg01no236_g09.b1 PHD_FILE: MSMg01no236_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:57 2005CHROMAT_FILE: MSMg01no236_g09.g1 PHD_FILE: MSMg01no236_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTTTCTTCATTAGAAACAAAGATGTACATAAAGTCATGAAAC
AATTATGGCAGCCTCTTCTCGCAAACACTGTAAGCAACTCCACTCAAAAC
CATGAGAATAAGCAAACATGCCATAGATCAATGGACTACTAGTGAGCAAA
GAATGAAAACCTAGGTAGTAACATAGATGAATCTTAAAATACGCTAAAAC
AAAGCCTTAATGACAAAGAAAGAAAACAATTGGATAGAAACACTTTATTT
TAAGCATTAGATATTCTTAATCTTATTTTGAAGGTAACTTACATAGTGTA
TCACTTCTCGTCTGCATATTTTACATCATATACATTATACTTTAACCTTT
TGCATATGTGCATGCAGTATACACATTTGCATGTGTGCACACAGACACTG
AAAGTTGACATTGGGTGCTGCTTTCTTCAATCCCTCTCTTCTGTATTTAA
TGAGACAGAGTGAGCTTACTGACTAGTCTAGCTAGCCAGTTTGCCTCAGG
GATCGATCCTGTTTCTCTTATTTCTTACTTCTCTTATTTCTATCTCCCAC
TTCTATCAGCCCCACCCCTACCTCCACACAAAACACGAAAAAAAACAAGA
AAACCAAACCAAATCAAAAAAGCCACTTTCCTATAACACAATACTGTGTT
GGAATGTATGGACTTAATATTTCCCTAAGGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTATCAGACGAGAATTCATGTATCTATAACTCCTTTGCCT
GTTCTTGAGATTCTTTCTCCTATCGGGTTGCTTTGTCCAGCCTCTCTATG
AGGGCTTCTGCCTTGTCTTGTTGTGTCTTCTTTTGTCCTGTTTGGTTGTT
GTCTCTTAGAGGCCTGCTCTTTTTCGGGAGAAAAATGGAGGGGGGATTGG
ATCTGGTGGAGAGGAGGTGGGGAGGNCCCTCTTCTTTTTTTCNTNCCCCC
TTNCTCACTCCTTCCTTTTTTTTTTTTCTTTGCCTGTTCCGTGGCTCGTT
CTTATTCTATTTTTTTCCTCCCCCCCCCCCACAACACAAATATATATTAA
TTTTTTACGCTCCCCGTTTCCTCACTTTTATTTAAAATTACTACCCTGCT
GCGTGTGGTATACATTATTACACTAGTTCATTATCTAATGCATAATTTAA
CTTTCTTTTACTCCTTTCAATCTATTAATTAATCTAAACGCTAACATTTA
AAACCCCTTCTCTGACATTAACTTGCCATTTATTTCCAATCCCTATTTTA
ACTCTTATTTTTTATTTTTCCCTCTTACTTTCTTTTCCCATATGCTTTTA
TTTCTATTCCCTTCCATTTTCCCCATTTTCCTTCCCATTATCTTCTTTCT
TTTCTTTCTCCCTTTTTTTTTTTTTACCTCCCCCCTTTTTTCTTCCCCCC
ACCATTTTATCCCTTTGTTAAACACTCCCTATCCTTAAATATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_g09.b1 MSMg01no236_g09.b1 CHROMAT_FILE:
MSMg01no236_g09.b1 PHD_FILE: MSMg01no236_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:57 2005
         (662 letters)



>mm_chr6_24599416_24600477
          Length = 1062

 Score = 1062 bits (549), Expect = 0.0
 Identities = 650/733 (88%), Gaps = 79/733 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaacaaagatgtacataaagtcatgaaacaattatggcagcctcttctcgcaaacactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 132 gaaacaaagatgtacataaagtcatgaaacaattatggcagcctcttct-gtaaacactg 190

                                                                       
Query: 61  taagcaactccactcaaaaccatgagaataagcaaacatg-------------------- 100
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 191 taagcaactccactcaaaaccatgagaataagcaaacatgggctggagagatggctcagc 250

                                                                       
Query: 101 --------------------------------------------------ccatagatca 110
                                                             ||||||||||
Sbjct: 251 cgttaaaggctaggctcacaaccaaaaatataagagaataagcaaacatgccatagatca 310

                                                                       
Query: 111 atggactactagtgagcaaagaatgaaaacctaggtagtaacatagatgaatcttaaaat 170
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atggactactagtgagtaaagaatgaaaacctaggtagtaacatagatgaatcttaaaat 370

                                                                       
Query: 171 acgctaaaacaaagccttaatgacaaagaaagaaaacaattggatagaaacactttattt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acgctaaaacaaagccttaatgacaaagaaagaaaacaattggatagaaacactttattt 430

                                                                       
Query: 231 taagcattagatattcttaatcttattttgaaggtaacttacatagtgtatcacttctcg 290
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 431 taagcattagatattcttaagcttattttgaaggtaacttacatagtgtatcacttctcg 490

                                                                       
Query: 291 tctgcatattttacatcatatacattatactttaaccttttgcatatgtgcatgcagtat 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tctgcatattttacatcatatacattatactttaaccttttgcatatgtgcatgcagtat 550

                                                                       
Query: 351 acacatttgcatgtgtgcacacagacactgaaagttgacattgggtgctgctttcttcaa 410
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 551 acacatttgcatgtgtgcacacggacactgaaagttgacattgggtgctgctttcttcaa 610

                                                                       
Query: 411 tccctctcttctgtatttaatgagacagagt-gagcttactgactagtctagctagccag 469
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 611 tccctctcttctgtatttaatgagacagagttgagcttactgactagtctagctagccag 670

                                                                       
Query: 470 tttgcctcagggatcgatcctgtttctcttatttcttacttctcttatttctatctccca 529
           ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||
Sbjct: 671 tttgcctcagggatcgatcctgtttctcttatttcttacttctcttat------ctccca 724

                                                                       
Query: 530 cttctatcagccccacccctacctccacacaaaacacgaaaaaaaacaagaaaaccaaac 589
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 725 cttctatcagccccacccctacctccacacaaaacacgaaaaaaa-caagaaaaccaaac 783

                                                                       
Query: 590 caaatcaaaaaagccactttcctataacacaatactgtgttggaatgtatggacttaata 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 caaatcaaaaaagccactttcctataacacaatactgtgttggaatgtatggacttaata 843

                        
Query: 650 tttccctaaggaa 662
           |||||||||||||
Sbjct: 844 tttccctaaggaa 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)