BAC Information

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BAC

Clone NameMSMg01-236I19
Chromosome6 (Build37)
Map Location 66,486,188 - 66,486,776
singlet/doubletsinglet
Overlap geneMad2l1
Upstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751
Downstream geneV1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236I19.T7 (MSMg01no236_i19.b1)MSMg01-236I19.TJ (MSMg01no236_i19.g1)
ACCAG401769AG401770
length744692
length of high quality
(start - end)
626 (36 - 661)293 (4 - 296)
definitionCHROMAT_FILE: MSMg01no236_i19.b1 PHD_FILE: MSMg01no236_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:08 2005CHROMAT_FILE: MSMg01no236_i19.g1 PHD_FILE: MSMg01no236_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATC
CTTCCTACACAAGTGTTGATGAATACTCTACTATGGATACAAATAGCAAG
GCATGTTTAGAAGTCTGGCCTTAAACTGGACACAGTGGCAAATGCCTTTA
GTCCCAGAACTTGGGAGTAGAGCCAGGCTGATCTTTGTGAGTTCAACGAC
AGCCCGGTCTACATAGCATGTTCAAGGACAGCCAGAGCTACATAAAGAGA
CCTGTCTCAAAAGCAAAGCAAAACAAAACGGTCTTAAAGACAGATGCCAA
GCTAAGCATGTTCAGGTGGCCACCAAAAGGCCATTTTAATACTGAAGTTA
ACAAAAAAAGCAATAAACACTGTAATGAATTTACAATTAAAACAAACTAC
AACACCCATTCACGTACAATAAAACTCAAAGAGAAAAAAAGGCAGTTGCA
ATGCTTTTAGAATTGGTATTTTGTATGATTTCATTGGGAGCTACAAAGCA
AAACACAGAAAGGCGAAATCCTTTTAATTGGGTAAAATTTCCAATTTGCT
GCAACTGGTTAACCTACAAAACCCACTCTTAAAGCAGCTTANAGACTCCT
AACATCAAGACATTCAGCCTACTTAAAAAGAGGCGGGGATTCCCTCCATT
GCTTGCTTCCTCCCAGTTGAGAATGACATTTGAGAAAGCATGTTGCTTTA
AGCTACTTGGGACACAAACCTGTAAGATACACACTGAAAACGTG
GATCCGCGGAATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGC
TTTTATTTCCCCCTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGG
GTGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTG
TTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTT
AGTTGTTATAGTTTTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTT
ACCCTCTATCATCAGGTGTGGGAGACAAGCTCTCTTCTCTGAGTTTTATT
TTTCACCACCCCCCCCTCTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTA
CAGTTATCTGGAGATAAGAACCTCCTCCTGGCTGAAGGTGAAGGCCCAAA
ACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGT
TGTCTGGAGTCGAAGATGTCGCCACCTCAGAAGCTCTGTGGCTCTTGTCC
GGAATGAGGCCGGCCGTCTGGAGCTGATGTTGGCTCTGCCTCAGAAGCTC
TGTGATTCTTGTCCGGATAGAGGTCGGTCTTCTGGAATTGATGTTGGCGC
CGTCTCTAAAGCTTTGCGGTTCTTGCCGAAAATGCGCCTGGTTTTTTGCA
CCTGATTATGGCTCCGTCTCACAATCTCTGCTAATCTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_i19.b1 MSMg01no236_i19.b1 CHROMAT_FILE:
MSMg01no236_i19.b1 PHD_FILE: MSMg01no236_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:08 2005
         (626 letters)



>mm_chr6_66485750_66486776
          Length = 1027

 Score = 1056 bits (546), Expect = 0.0
 Identities = 578/589 (98%), Gaps = 1/589 (0%)
 Strand = Plus / Minus

                                                                        
Query: 39   tactctactatggatacaaatagcaaggcatgtttagaagtctggccttaaactggacac 98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 tactctactatggatacaaatagcaaggcatgtttagaagtctggccttaaactggacac 968

                                                                        
Query: 99   agtggcaaatgcctttagtcccagaacttgggagtagagccaggctgatctttgtgagtt 158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  agtggcaaatgcctttagtcccagaacttgggagtagagccaggctgatctttgtgagtt 908

                                                                        
Query: 159  caacgacagcccggtctacatagcatgttcaaggacagccagagctacataaagagacct 218
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  caacgatagccgggtctacatagcatgttcaaggacagccagagctacataaagagacct 848

                                                                        
Query: 219  gtctcaaaagcaaagcaaaacaaaacggtcttaaagacagatgccaagctaagcatgttc 278
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 847  gtctcaaaagcaaagcaaaacaaaacggccttaaagacagatgccaagctaaccatgttc 788

                                                                        
Query: 279  aggtggccaccaaaaggccattttaatactgaagttaacaaaaaaagcaataaacactg- 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 787  aggtggccaccaaaaggccattttaatactgaagttaacaaaaaaagcaataaacactgt 728

                                                                        
Query: 338  taatgaatttacaattaaaacaaactacaacacccattcacgtacaataaaactcaaaga 397
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 727  taatgaatttacaattaaaacaaactacaacaccctttcacgtacaataaaactcaaaga 668

                                                                        
Query: 398  gaaaaaaaggcagttgcaatgcttttagaattggtattttgtatgatttcattgggagct 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  gaaaaaaaggcagttgcaatgcttttagaattggtattttgtatgatttcattgggagct 608

                                                                        
Query: 458  acaaagcaaaacacagaaaggcgaaatccttttaattgggtaaaatttccaatttgctgc 517
            |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 607  acaaagcaaaacacagaatggcgaaatccttttaatcgggtaaaatttccaatttgctgc 548

                                                                        
Query: 518  aactggttaacctacaaaacccactcttaaagcagcttanagactcctaacatcaagaca 577
            ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 547  aactggttaacctacaaaacccactcttaaagcagcttaaagattcctaacatcaagaca 488

                                                             
Query: 578  ttcagcctacttaaaaagaggcggggattccctccattgcttgcttcct 626
            ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 487  ttcagcctacttaaaaagaggtggggattccctccattgcttgcttcct 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space:   626472
Effective search space used:   626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)