Query= MSMg01no236_k16.b1 MSMg01no236_k16.b1 CHROMAT_FILE:
MSMg01no236_k16.b1 PHD_FILE: MSMg01no236_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:17 2005
(611 letters)
>mm_chr6_45881908_45882919
Length = 1012
Score = 810 bits (419), Expect = 0.0
Identities = 440/447 (98%), Gaps = 2/447 (0%)
Strand = Plus / Minus
Query: 167 actggaatgaacctgagccactggtggggcaggcttcctctatccctgtatcctgatggt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 actggaatgaacctgagccactggtggggcaggcttcctctatccctgtatcctgatggt 953
Query: 227 cccagttacttccagtggtgttggaataggtgttgtgttctactcacccctgatcctaag 286
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 cccagttacttccagtggttttggaataggtgttgtgttctactcacccctgatcctaag 893
Query: 287 atcctgggtgtgctagag-acctgggagtggagcctcctctgggggatgttagactggct 345
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 892 atcctgggtgtgctagagcacctgggagtagagcctcctctgggggatgttagactggct 833
Query: 346 gctgagtttgtgctcaaggtaaacaggtgcagggtaaaaataattcttagtgaagttata 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gctgagtttgtgctcaaggtaaacaggtgcagggtaaaaataattcttagtgaagttata 773
Query: 406 tctgaatagtgaatatatctctatattgcaaggcatgaaaacttgtccaggtgaagggaa 465
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 772 tctgaatagtgaatatatctctatgttgcaaggcaagaaaacttgtccaggtgaagggaa 713
Query: 466 agggggatgactttccaggcgagttgaacagcctgaatgaacacatgtgaaagaagtatg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 agggggatgactttccaggcgagttgaacagcctgaatgaacacatgtgaaagaagtatg 653
Query: 526 tcatctgtgtgtctgtaaacacacatagtttgaatgaatgaagtataaattgcaacatgt 585
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 652 tcatctgtgtgtctgtaaacacacatagtttgaatgaatgaagtataagttgcaacatgt 593
Query: 586 aactggctgaagctaacaga-gctcct 611
|||||||||||||||||||| ||||||
Sbjct: 592 aactggctgaagctaacagaggctcct 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_k16.g1 MSMg01no236_k16.g1 CHROMAT_FILE:
MSMg01no236_k16.g1 PHD_FILE: MSMg01no236_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:17 2005
(660 letters)
>mm_chr6_45835446_45836506
Length = 1061
Score = 1259 bits (651), Expect = 0.0
Identities = 657/659 (99%), Gaps = 1/659 (0%)
Strand = Plus / Plus
Query: 1 aggtcatctctgagagaagaatgcactcttaaccactcagccatctccacatctcttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcatctctgagagaagaatgcactcttaaccactcagccatctccacatctcttgaa 260
Query: 61 aatcatctcgtaagcctttcccacaaattaaatagaaatgactaagctgtatgtaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcatctcgtaagcctttcccacaaattaaatagaaatgactaagctgtatgtaattaa 320
Query: 121 tctgatgaagctaatgaaattcagttatttgagtgataatgtaaatttaacttacataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgatgaagctaatgaaattcagttatttgagtgataatgtaaatttaacttacataaa 380
Query: 181 tattagatatcttaaaatatttgatgacatttagtttctactctataatttaagcacctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattagatatcttaaaatatttgatgacatttagtttctactctataatttaagcacctc 440
Query: 241 atgaactatctccgtcacactaacaatagacagaacatagctcattctcattgaggaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaactatctccgtcacactaacaatagacagaacatagctcattctcattgaggaaat 500
Query: 301 ttcagaaaatagttattatcttcagaggctttagagaaaatagagaatacgctaagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagaaaatagttattatcttcagaggctttagagaaaatagagaatacgctaagaaaa 560
Query: 361 taaatgtgcttctttccacatcatctattgaaaaaaaa-taattgcacattcactttctt 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 taaatgtgcttctttccacatcatctattgaaaaaaaaataattgcacattcactttctt 620
Query: 420 gttccttattaaagctaattaacttgaaagttaaaagatttaatagatgaaatcttttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttccttattaaagctaattaacttgaaagttaaaagatttaatagatgaaatcttttaa 680
Query: 480 tggatagcaaggtcaacccaatattacccactaaaagaatgcttaattttatgtggcccc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 tggatagcaaggtcaacccaatattacccactaaaagaatgcttaattttatatggcccc 740
Query: 540 actgtttaaataggcctgattatgggacccctttactttctgttatccatatttacttag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgtttaaataggcctgattatgggacccctttactttctgttatccatatttacttag 800
Query: 600 tgtccctcagaaaagaattctaaacttttatgcccattatcaagtaggaaggattgtca 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtccctcagaaaagaattctaaacttttatgcccattatcaagtaggaaggattgtca 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
